Equivalence class NR_20.0_46651.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5B2T|1|A (rep) | Guide RNA | Streptococcus pyogenes | Crystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM) | X-ray diffraction | 2.2 | 2016-03-23 | |||
| 2 | 5B2R|1|A | Guide RNA | Streptococcus pyogenes | Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM) | X-ray diffraction | 2 | 2016-03-23 | |||
| 3 | 5B2S|1|A | Guide RNA | Streptococcus pyogenes | Crystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target DNA (TGAG PAM) | X-ray diffraction | 2.2 | 2016-03-23 | |||
| 4 | 4OO8|1|B | RNA (97-MER) | Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA | X-ray diffraction | 2.5 | 2014-02-26 | ||||
| 5 | 4OO8|1|E | RNA (97-MER) | Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA | X-ray diffraction | 2.5 | 2014-02-26 | ||||
| 6 | 6AI6|1|B | RNA (81-MER) | Streptococcus pyogenes | Crystal structure of SpCas9-NG | X-ray diffraction | 2.7 | 2018-10-31 | |||
| 7 | 5XBL|1|B | RNA (98-MER) | Streptococcus pyogenes | Structure of nuclease in complex with associated protein | X-ray diffraction | 3.05 | 2017-06-14 | |||
| 8 | 6IFO|1|C | RNA (99-MER) | Streptococcus pyogenes | Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex | X-ray diffraction | 3.31 | 2019-01-23 | |||
| 9 | 6IFO|1|D | RNA (99-MER) | Streptococcus pyogenes | Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex | X-ray diffraction | 3.31 | 2019-01-23 | |||
| 10 | 8SRS|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA | Electron microscopy | 2.79 | 2024-05-01 | |||
| 11 | 8T7S|1|B | gRNA | Streptococcus pyogenes | SpRYmer bound to NAC PAM DNA | Electron microscopy | 3.01 | 2024-05-01 | |||
| 12 | 8T6X|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop | Electron microscopy | 3.08 | 2024-05-01 | |||
| 13 | 8T6T|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop | Electron microscopy | 3.04 | 2024-05-01 | |||
| 14 | 8SPQ|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TGG PAM DNA | Electron microscopy | 3.26 | 2024-05-01 | |||
| 15 | 8T6Y|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop | Electron microscopy | 2.88 | 2024-05-01 | |||
| 16 | 8T78|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop | Electron microscopy | 3.02 | 2024-05-01 | |||
| 17 | 8T7S|1|H | gRNA | Streptococcus pyogenes | SpRYmer bound to NAC PAM DNA | Electron microscopy | 3.01 | 2024-05-01 | |||
| 18 | 8T6P|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop | Electron microscopy | 3.15 | 2024-05-01 | |||
| 19 | 8T77|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop | Electron microscopy | 3.25 | 2024-05-01 | |||
| 20 | 8T6S|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop | Electron microscopy | 3.28 | 2024-05-01 | |||
| 21 | 8SQH|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TTC PAM DNA | Electron microscopy | 3.69 | 2024-05-01 | |||
| 22 | 8T76|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop | Electron microscopy | 3.42 | 2024-05-01 |
Release history
| Release | 3.333 |
|---|---|
| Date | 2024-05-01 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8T77|1|B | SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop | ELECTRON MICROSCOPY | 3.25 | 89 | |
| 2 | 8T6Y|1|B | SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop | ELECTRON MICROSCOPY | 2.88 | 88 | |
| 3 | 8T78|1|B | SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop | ELECTRON MICROSCOPY | 3.02 | 89 | |
| 4 | 8T6S|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop | ELECTRON MICROSCOPY | 3.28 | 90 | |
| 5 | 8T76|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop | ELECTRON MICROSCOPY | 3.42 | 88 | |
| 6 | 8T6P|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop | ELECTRON MICROSCOPY | 3.15 | 88 | |
| 7 | 8T6T|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop | ELECTRON MICROSCOPY | 3.04 | 95 | |
| 8 | 8SQH|1|B | SpRY-Cas9:gRNA complex targeting TTC PAM DNA | ELECTRON MICROSCOPY | 3.69 | 98 | |
| 9 | 8SRS|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA | ELECTRON MICROSCOPY | 2.79 | 98 | |
| 10 | 8SPQ|1|B | SpRY-Cas9:gRNA complex targeting TGG PAM DNA | ELECTRON MICROSCOPY | 3.26 | 98 | |
| 11 | 8T6X|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop | ELECTRON MICROSCOPY | 3.08 | 96 | |
| 12 | 8T7S|1|B | SpRYmer bound to NAC PAM DNA | ELECTRON MICROSCOPY | 3.01 | 98 | |
| 13 | 8T7S|1|H | SpRYmer bound to NAC PAM DNA | ELECTRON MICROSCOPY | 3.01 | 88 | |
| 14 | 4OO8|1|E | Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA | X-RAY DIFFRACTION | 2.5 | 97 | |
| 15 | 4OO8|1|B | Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA | X-RAY DIFFRACTION | 2.5 | 97 | |
| 16 | 6AI6|1|B | Crystal structure of SpCas9-NG | X-RAY DIFFRACTION | 2.7 | 81 | |
| 17 | 5B2T|1|A | Crystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM) | X-RAY DIFFRACTION | 2.2 | 81 | |
| 18 | 5B2R|1|A | Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM) | X-RAY DIFFRACTION | 2 | 81 | |
| 19 | 5B2S|1|A | Crystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target DNA (TGAG PAM) | X-RAY DIFFRACTION | 2.2 | 81 | |
| 20 | 6IFO|1|C | Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex | X-RAY DIFFRACTION | 3.31 | 88 | |
| 21 | 6IFO|1|D | Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex | X-RAY DIFFRACTION | 3.31 | 90 | |
| 22 | 5XBL|1|B | Structure of nuclease in complex with associated protein | X-RAY DIFFRACTION | 3.05 | 88 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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