Equivalence class NR_20.0_60125.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6T4Q|1|6 (rep) | Transfer RNA | ICG tRNA Arg (P/P), mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 2019-12-25 |
| 2 | 6SNT|1|6 | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 2020-03-04 |
| 3 | 9F9S|1|CP | Transfer RNA | tRNA P-site, stalled | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast SDD1 Disome with Mbf1 | Electron microscopy | 2.9 | 2024-12-04 |
| 4 | 6Q8Y|1|n | Transfer RNA | mRNA, P-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 2019-03-13 |
| 5 | 7ZS5|1|2 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA | Electron microscopy | 3.2 | 2023-02-22 |
| 6 | 7RR5|1|P | Transfer RNA | mRNA, P-tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 7 | 6SV4|1|n | Transfer RNA | tRNA (P/P) | Saccharomyces cerevisiae | Eukarya | RF00005 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 8 | 6T7I|1|6 | Transfer RNA | ICG tRNA Arg, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 2019-12-25 |
| 9 | 7ZPQ|1|6 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1) | Electron microscopy | 3.47 | 2023-02-22 |
| 10 | 7ZUW|1|6 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae | Electron microscopy | 4.3 | 2023-02-22 |
| 11 | 6I7O|1|n | Transfer RNA | P-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 2019-01-16 |
Release history
| Release | 3.364 |
|---|---|
| Date | 2024-12-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7RR5|1|P | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 76 | |
| 2 | 6SV4|1|n | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 76 | |
| 3 | 6I7O|1|n | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | ELECTRON MICROSCOPY | 5.3 | 76 | |
| 4 | 6Q8Y|1|n | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 5 | 6T4Q|1|6 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 75 | |
| 6 | 6T7I|1|6 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 75 | |
| 7 | 6SNT|1|6 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 75 | |
| 8 | 9F9S|1|CP | Yeast SDD1 Disome with Mbf1 | ELECTRON MICROSCOPY | 2.9 | 76 | |
| 9 | 7ZUW|1|6 | Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 4.3 | 76 | |
| 10 | 7ZPQ|1|6 | Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1) | ELECTRON MICROSCOPY | 3.47 | 76 | |
| 11 | 7ZS5|1|2 | Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA | ELECTRON MICROSCOPY | 3.2 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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