#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WSM|1|1K (rep)Transfer RNAmRNA, tRNA-LeuEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
24WSM|1|2KTransfer RNAmRNA, tRNA-LeuEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
34WSM|1|2LTransfer RNAmRNA, tRNA-LeuEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
44WSM|1|1LTransfer RNAmRNA, tRNA-LeuEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
54V8B|1|ABTransfer RNAMRNA, TRNA-LEUEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
64V8C|1|CBMRNA, TRNA-LEUCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
74V8C|1|DBMRNA, TRNA-LEUCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
84V8B|1|CBTransfer RNAMRNA, TRNA-LEUEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
97NSO|1|8Transfer RNAmRNA, PtRNA-LeuEscherichia coliBacteriaRF00005Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNAElectron microscopy2.92021-07-14
107NSQ|1|8Transfer RNAmRNA, PtRNA (Leu)Escherichia coliBacteriaRF00005Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNAElectron microscopy3.12021-07-14
116HA1|1|xTransfer RNAmRNA, P-tRNAEscherichia coliBacteriaRF00005Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
126D9J|1|3Transfer RNAP-site tRNAEscherichia coliBacteriaRF00005Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
136D90|1|3Transfer RNAP-tRNAEscherichia coliBacteriaRF00005Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
147NSP|1|8Transfer RNAmRNA, P-tRNA (leu)Escherichia coliBacteriaRF00005Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNAElectron microscopy3.52021-08-11
155KCR|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolutionElectron microscopy3.62016-08-17

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.361
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14WSM|1|2KComplex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.373
26D90|1|3Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.287
36D9J|1|3Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.287
47NSO|1|8Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNAELECTRON MICROSCOPY2.987
57NSQ|1|8Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNAELECTRON MICROSCOPY3.187
67NSP|1|8Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNAELECTRON MICROSCOPY3.587
76HA1|1|xCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.187
85KCR|1|1xCryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolutionELECTRON MICROSCOPY3.687
94V8B|1|ABCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION387
104WSM|1|1KComplex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.383
114V8C|1|CBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.387
124V8C|1|DBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.387
134V8B|1|CBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION387
144WSM|1|1LComplex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.383
154WSM|1|2LComplex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.374

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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