Equivalence class NR_20.0_73286.16 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QW6|1|5 (rep) | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | Electron microscopy | 2.92 | 2019-04-17 |
| 2 | 7DVQ|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) | Electron microscopy | 2.89 | 2021-03-31 |
| 3 | 6QX9|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | Electron microscopy | 3.28 | 2019-04-17 |
| 4 | 6QDV|1|5 | U5 spliceosomal RNA | Ligated exons: MINX mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 5 | 6ZYM|1|5 | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human C Complex Spliceosome - High-resolution CORE | Electron microscopy | 3.4 | 2020-10-14 |
| 6 | 6ICZ|1|B | U5 spliceosomal RNA | pre-mRNA, U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 7 | 7W59|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human pre-C*-I complex | Electron microscopy | 3.6 | 2022-06-22 |
| 8 | 7W5A|1|B | U5 spliceosomal RNA | Pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human pre-C*-II complex | Electron microscopy | 3.6 | 2022-06-22 |
| 9 | 6FF4|1|5 | U5 spliceosomal RNA | pre mRNA, U2 snRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 3.4 | 2018-08-29 |
| 10 | 6ID0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | Electron microscopy | 2.9 | 2019-03-13 |
| 11 | 5XJC|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 12 | 6ID1|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | Electron microscopy | 2.86 | 2019-03-13 |
| 13 | 7W5B|1|B | U5 spliceosomal RNA | Pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human C* complex | Electron microscopy | 4.3 | 2022-06-22 |
| 14 | 7AAV|1|5 | U5 spliceosomal RNA | MINX M3 pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-2 spliceosome core structure | Electron microscopy | 4.2 | 2020-12-09 |
| 15 | 5YZG|1|B | U5 spliceosomal RNA | Pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | Electron microscopy | 4.1 | 2018-08-08 |
| 16 | 6AHD|1|B | U5 spliceosomal RNA | pre-mRNA, U5snRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | Electron microscopy | 3.8 | 2018-11-14 |
| 17 | 5O9Z|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | Electron microscopy | 4.5 | 2017-08-16 |
| 18 | 6FF7|1|5 | U5 spliceosomal RNA | pre-mRNA, U2 snRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 4.5 | 2019-03-13 |
| 19 | 7ABF|1|5 | U5 spliceosomal RNA | MINX M3 RNA, U5 small nuclear RNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-1 spliceosome core structure | Electron microscopy | 3.9 | 2020-12-09 |
| 20 | 5Z58|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | Electron microscopy | 4.9 | 2018-09-19 |
| 21 | 7A5P|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human C Complex Spliceosome - Medium-resolution PERIPHERY | Electron microscopy | 5 | 2020-10-14 |
| 22 | 5Z56|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | Electron microscopy | 5.1 | 2018-09-19 |
| 23 | 6AH0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | Electron microscopy | 5.7 | 2018-11-14 |
| 24 | 5MQF|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 25 | 5Z57|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | Electron microscopy | 6.5 | 2018-09-19 |
| 26 | 3JCR|1|H | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | Electron microscopy | 7 | 2016-03-09 |
| 27 | 7ABG|1|5 | U5 spliceosomal RNA | MINX M3 pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-1 spliceosome | Electron microscopy | 7.8 | 2020-12-23 |
| 28 | 7ABI|1|5 | U5 spliceosomal RNA | MINX M3 pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-2 spliceosome | Electron microscopy | 8 | 2021-02-10 |
Release history
| Release | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_73286.16 | NR_20.0_73286.15 | 3.236 | (25) 3JCR|1|H, 5MQF|1|5, 5O9Z|1|5, 5XJC|1|B, 5YZG|1|B, 5Z56|1|B, 5Z57|1|B, 5Z58|1|B, 6AH0|1|B, 6AHD|1|B, 6FF4|1|5, 6FF7|1|5, 6ICZ|1|B, 6ID0|1|B, 6ID1|1|B, 6QDV|1|5, 6QW6|1|5, 6QX9|1|5, 6ZYM|1|5, 7A5P|1|5, 7AAV|1|5, 7ABF|1|5, 7ABG|1|5, 7ABI|1|5, 7DVQ|1|B | (3) 7W59|1|B, 7W5A|1|B, 7W5B|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_73286.16 | NR_20.0_73286.17 | 3.282 | (28) 3JCR|1|H, 5MQF|1|5, 5O9Z|1|5, 5XJC|1|B, 5YZG|1|B, 5Z56|1|B, 5Z57|1|B, 5Z58|1|B, 6AH0|1|B, 6AHD|1|B, 6FF4|1|5, 6FF7|1|5, 6ICZ|1|B, 6ID0|1|B, 6ID1|1|B, 6QDV|1|5, 6QW6|1|5, 6QX9|1|5, 6ZYM|1|5, 7A5P|1|5, 7AAV|1|5, 7ABF|1|5, 7ABG|1|5, 7ABI|1|5, 7DVQ|1|B, 7W59|1|B, 7W5A|1|B, 7W5B|1|B | (0) | (2) 7QTT|1|e, 8CH6|1|e |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6AHD|1|B | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 115 | |
| 2 | 6AH0|1|B | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | ELECTRON MICROSCOPY | 5.7 | 115 | |
| 3 | 5O9Z|1|5 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 114 | |
| 4 | 5MQF|1|5 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 114 | |
| 5 | 7A5P|1|5 | Human C Complex Spliceosome - Medium-resolution PERIPHERY | ELECTRON MICROSCOPY | 5 | 40 | |
| 6 | 7ABI|1|5 | Human pre-Bact-2 spliceosome | ELECTRON MICROSCOPY | 8 | 114 | |
| 7 | 7ABG|1|5 | Human pre-Bact-1 spliceosome | ELECTRON MICROSCOPY | 7.8 | 114 | |
| 8 | 7ABF|1|5 | Human pre-Bact-1 spliceosome core structure | ELECTRON MICROSCOPY | 3.9 | 58 | |
| 9 | 7AAV|1|5 | Human pre-Bact-2 spliceosome core structure | ELECTRON MICROSCOPY | 4.2 | 69 | |
| 10 | 6FF7|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 4.5 | 70 | |
| 11 | 6FF4|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 70 | |
| 12 | 6ZYM|1|5 | Human C Complex Spliceosome - High-resolution CORE | ELECTRON MICROSCOPY | 3.4 | 74 | |
| 13 | 6QDV|1|5 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 75 | |
| 14 | 7DVQ|1|B | Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) | ELECTRON MICROSCOPY | 2.89 | 90 | |
| 15 | 6QX9|1|5 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 104 | |
| 16 | 6QW6|1|5 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | ELECTRON MICROSCOPY | 2.92 | 104 | |
| 17 | 7W59|1|B | The cryo-EM structure of human pre-C*-I complex | ELECTRON MICROSCOPY | 3.6 | 84 | |
| 18 | 7W5A|1|B | The cryo-EM structure of human pre-C*-II complex | ELECTRON MICROSCOPY | 3.6 | 84 | |
| 19 | 7W5B|1|B | The cryo-EM structure of human C* complex | ELECTRON MICROSCOPY | 4.3 | 84 | |
| 20 | 6ID0|1|B | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 98 | |
| 21 | 6ID1|1|B | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 98 | |
| 22 | 6ICZ|1|B | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 97 | |
| 23 | 5XJC|1|B | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 84 | |
| 24 | 5YZG|1|B | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 84 | |
| 25 | 5Z57|1|B | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 84 | |
| 26 | 5Z56|1|B | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 84 | |
| 27 | 5Z58|1|B | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 84 | |
| 28 | 3JCR|1|H | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 63 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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