Equivalence class NR_20.0_74023.8 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6S0X|1|a (rep) | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2019-08-21 |
| 2 | 5NGM|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 3 | 7ASP|1|X | Small subunit ribosomal RNA | 16S rRNA | Staphylococcus aureus | Bacteria | RF00177 | Staphylococcus aureus 70S after 50 minutes incubation at 37C | Electron microscopy | 2.86 | 2021-11-17 |
| 4 | 7NHL|1|a | Small subunit ribosomal RNA | 16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 5 | 7NHM|1|a | Small subunit ribosomal RNA | 16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 6 | 6YEF|1|a | Small subunit ribosomal RNA | 16S rRNA, mRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | Electron microscopy | 3.2 | 2021-01-27 |
| 7 | 7ASO|1|X | Small subunit ribosomal RNA | 16S | Staphylococcus aureus | Bacteria | RF00177 | Staphylococcus aureus 70S after 30 minutes incubation at 37C | Electron microscopy | 3.11 | 2021-11-17 |
| 8 | 6S13|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.58 | 2019-08-21 |
| 9 | 5ND8|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 10 | 5ND9|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 11 | 7KWG|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine | Electron microscopy | 3.75 | 2021-01-27 |
| 12 | 5LI0|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
| 13 | 5T7V|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
| 14 | 7BGD|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only) | Electron microscopy | 3.2 | 2021-12-08 |
| 15 | 5TCU|1|A | Small subunit ribosomal RNA | 16S RRNA | Staphylococcus aureus | Bacteria | RF00177 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
| 16 | 7BGE|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only) | Electron microscopy | 3.6 | 2021-12-08 |
| 17 | 6FXC|1|Ba | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 18 | 6FXC|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_74023.8 | NR_20.0_74023.7 | 3.208 | (16) 5LI0|1|a, 5ND8|1|a, 5ND9|1|a, 5NGM|1|Aa, 5T7V|1|A, 5TCU|1|A, 6FXC|1|Aa, 6FXC|1|Ba, 6S0X|1|a, 6S13|1|a, 6YEF|1|a, 7ASO|1|X, 7ASP|1|X, 7KWG|1|a, 7NHL|1|a, 7NHM|1|a | (2) 7BGD|1|a, 7BGE|1|a | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_74023.8 | NR_20.0_74023.9 | 3.216 | (18) 5LI0|1|a, 5ND8|1|a, 5ND9|1|a, 5NGM|1|Aa, 5T7V|1|A, 5TCU|1|A, 6FXC|1|Aa, 6FXC|1|Ba, 6S0X|1|a, 6S13|1|a, 6YEF|1|a, 7ASO|1|X, 7ASP|1|X, 7BGD|1|a, 7BGE|1|a, 7KWG|1|a, 7NHL|1|a, 7NHM|1|a | (0) | (1) 7P48|1|a |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7BGE|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only) | ELECTRON MICROSCOPY | 3.6 | 465 | |
| 2 | 5TCU|1|A | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 1464 | |
| 3 | 6YEF|1|a | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 1540 | |
| 4 | 5ND8|1|a | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 1542 | |
| 5 | 5LI0|1|a | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 1547 | |
| 6 | 7NHM|1|a | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 1531 | |
| 7 | 7NHL|1|a | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 1538 | |
| 8 | 7KWG|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine | ELECTRON MICROSCOPY | 3.75 | 1552 | |
| 9 | 7BGD|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only) | ELECTRON MICROSCOPY | 3.2 | 1096 | |
| 10 | 5ND9|1|a | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 1541 | |
| 11 | 5NGM|1|Aa | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 1539 | |
| 12 | 6FXC|1|Ba | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 1539 | |
| 13 | 6FXC|1|Aa | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 1539 | |
| 14 | 6S0X|1|a | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 1539 | |
| 15 | 6S13|1|a | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 1539 | |
| 16 | 5T7V|1|A | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 1419 | |
| 17 | 7ASO|1|X | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 1415 | |
| 18 | 7ASP|1|X | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 1447 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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