NR_20.0_76703.10

Members (35)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	5E81\|1\|1K (rep)	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	72	2016-01-27
2	5EL6\|1\|1L	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-ray diffraction	3.1	73	2016-01-27
3	5IB8\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-ray diffraction	3.13	72	2016-05-25
4	5EL4\|1\|1K	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-ray diffraction	3.15	69	2016-01-27
5	5IB7\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	72	2016-05-25
6	5E7K\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-ray diffraction	3.2	71	2016-01-27
7	5EL4\|1\|1L	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-ray diffraction	3.15	74	2016-01-27
8	5EL6\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-ray diffraction	3.1	69	2016-01-27
9	5EL7\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-ray diffraction	3.15	69	2016-01-27
10	5E81\|1\|1L	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	69	2016-01-27
11	5E7K\|1\|1L	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-ray diffraction	3.2	73	2016-01-27
12	5EL7\|1\|1L	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-ray diffraction	3.15	73	2016-01-27
13	5IB7\|1\|1L	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	66	2016-05-25
14	5EL5\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-ray diffraction	3.15	69	2016-01-27
15	5EL5\|1\|1L	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-ray diffraction	3.15	74	2016-01-27
16	7N1P\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	76	2021-07-14
17	8BF7\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	76	2023-08-16
18	7N2U\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	76	2021-07-14
19	8BH4\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.62	76	2023-08-16
20	7N30\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	76	2021-07-14
21	7N31\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	76	2021-07-14
22	7N2C\|1\|Pt	Transfer RNA	Chains: mR, Chains: Pt	Escherichia coli	Bacteria	RF00005	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	76	2021-07-14
23	8BHJ\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.81	76	2023-08-16
24	7ZTA\|1\|PTR1	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli K-12	Bacteria	RF00005	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	Electron microscopy	2.7	73	2023-04-12
25	8BHN\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.85	76	2023-08-16
26	8FOM\|1\|QV	Transfer RNA	mRNA, P-site tRNA^Lys(SUU)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-ray diffraction	3.58	74	2023-03-29
27	5JTE\|1\|AW	Transfer RNA	A-site Lysine tRNA Lysine, mRNA	Escherichia coli	Bacteria	RF00005	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	Electron microscopy	3.6	74	2016-07-20
28	8FON\|1\|QV	Transfer RNA	mRNA, P-site tRNA^Lys(SUU)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-ray diffraction	3.64	74	2023-03-29
29	8FON\|1\|XV	Transfer RNA	A-site ASL^Phe, mRNA, P-site tRNA^Lys(SUU)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-ray diffraction	3.64	74	2023-03-29
30	8FOM\|1\|XV	Transfer RNA	mRNA, P-site tRNA^Lys(SUU)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-ray diffraction	3.58	74	2023-03-29
31	5UYQ\|1\|Y	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)	Electron microscopy	3.8	76	2017-06-07
32	5UYP\|1\|Y	Transfer RNA	tRNALys	Escherichia coli	Bacteria	RF00005	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)	Electron microscopy	3.9	76	2017-06-07
33	5UYN\|1\|Y	Transfer RNA	tRNALys	Escherichia coli	Bacteria	RF00005	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)	Electron microscopy	4	76	2017-06-07
34	7D6Z\|1\|4	Transfer RNA	A-site tRNA	Escherichia coli	Bacteria	RF00005	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor	Electron microscopy	3.4	66	2021-04-07
35	7D80\|1\|Z	Transfer RNA	A-site tRNA	Escherichia coli	Bacteria	RF00005	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase	Electron microscopy	4.1	66	2021-04-07

Release history

Release	3.378	3.379	3.380	3.381	3.382	3.383	3.384	3.385	3.386	3.387	3.388	3.389	3.390	3.391
Date	2025-03-13	2025-03-19	2025-03-26	2025-04-02	2025-04-09	2025-04-16	2025-04-23	2025-04-30	2025-05-07	2025-05-14	2025-05-21	2025-05-28	2025-06-04	2025-06-11

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	5EL5\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-RAY DIFFRACTION	3.15	69
2	5EL7\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-RAY DIFFRACTION	3.15	69
3	5EL6\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-RAY DIFFRACTION	3.1	69
4	5EL4\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-RAY DIFFRACTION	3.15	69
5	5E7K\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-RAY DIFFRACTION	3.2	71
6	5E81\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	72
7	5IB7\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	72
8	5IB8\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-RAY DIFFRACTION	3.13	72
9	5EL4\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-RAY DIFFRACTION	3.15	74
10	5EL6\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-RAY DIFFRACTION	3.1	73
11	5E7K\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-RAY DIFFRACTION	3.2	73
12	5E81\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	69
13	5IB7\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	66
14	5EL7\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-RAY DIFFRACTION	3.15	73
15	5EL5\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-RAY DIFFRACTION	3.15	74
16	8BHJ\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.81	76
17	8BH4\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.62	76
18	8BF7\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	76
19	8BHN\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.85	76
20	7ZTA\|1\|PTR1	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	ELECTRON MICROSCOPY	2.7	73
21	8FON\|1\|QV	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-RAY DIFFRACTION	3.64	74
22	8FOM\|1\|XV	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-RAY DIFFRACTION	3.58	74
23	8FOM\|1\|QV	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-RAY DIFFRACTION	3.58	74
24	8FON\|1\|XV	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-RAY DIFFRACTION	3.64	74
25	7N31\|1\|Pt	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	76
26	7N2C\|1\|Pt	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	76
27	7N2U\|1\|Pt	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	76
28	7N30\|1\|Pt	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	76
29	7N1P\|1\|Pt	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	76
30	5JTE\|1\|AW	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	ELECTRON MICROSCOPY	3.6	74
31	7D6Z\|1\|4	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor	ELECTRON MICROSCOPY	3.4	66
32	7D80\|1\|Z	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase	ELECTRON MICROSCOPY	4.1	66
33	5UYN\|1\|Y	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)	ELECTRON MICROSCOPY	4	76
34	5UYP\|1\|Y	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)	ELECTRON MICROSCOPY	3.9	76
35	5UYQ\|1\|Y	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)	ELECTRON MICROSCOPY	3.8	76

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_76703.10 Current

Release history

Parents

Children