Equivalence class NR_20.0_77343.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8P03|1|1 (rep) | Transfer RNA | initiator methionylated tRNA, m6A-methylated mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | 48S late-stage initiation complex with m6A mRNA | Electron microscopy | 3.04 | 2024-03-20 |
| 2 | 8P09|1|1 | Transfer RNA | initiator methionylated tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | 48S late-stage initiation complex with non methylated mRNA | Electron microscopy | 3.3 | 2024-03-20 |
| 3 | 7SYS|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). | Electron microscopy | 3.5 | 2022-07-27 |
| 4 | 7SYR|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). | Electron microscopy | 3.6 | 2022-07-27 |
| 5 | 7SYW|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 6 | 7SYX|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 7 | 6HCJ|1|33 | Transfer RNA | mRNA, P/E tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 2018-10-17 |
| 8 | 7SYV|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | Electron microscopy | 3.9 | 2022-07-20 |
| 9 | 7SYT|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | Electron microscopy | 4.4 | 2022-07-13 |
| 10 | 7SYU|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 11 | 5K0Y|1|N | Transfer RNA | mRNA, tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | Electron microscopy | 5.8 | 2016-07-13 |
| 12 | 6HCQ|1|33 | Transfer RNA | mRNA, P/E tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit collided di-ribosome (collided monosome) | Electron microscopy | 6.5 | 2018-10-17 |
Release history
| Release | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6HCQ|1|33 | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 75 | |
| 2 | 6HCJ|1|33 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 75 | |
| 3 | 5K0Y|1|N | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 75 | |
| 4 | 7SYS|1|i | Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). | ELECTRON MICROSCOPY | 3.5 | 75 | |
| 5 | 7SYR|1|i | Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). | ELECTRON MICROSCOPY | 3.6 | 75 | |
| 6 | 7SYU|1|i | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | ELECTRON MICROSCOPY | 4.6 | 75 | |
| 7 | 7SYT|1|i | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | ELECTRON MICROSCOPY | 4.4 | 75 | |
| 8 | 8P03|1|1 | 48S late-stage initiation complex with m6A mRNA | ELECTRON MICROSCOPY | 3.04 | 74 | |
| 9 | 8P09|1|1 | 48S late-stage initiation complex with non methylated mRNA | ELECTRON MICROSCOPY | 3.3 | 74 | |
| 10 | 7SYV|1|i | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | ELECTRON MICROSCOPY | 3.9 | 75 | |
| 11 | 7SYW|1|i | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 75 | |
| 12 | 7SYX|1|i | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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