1 | 5J7L|1|DA (rep) | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
2 | 5J8A|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
3 | 5JC9|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
4 | 4YBB|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
5 | 5IT8|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
6 | 4WOI|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
7 | 4WOI|1|CA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
8 | 6I7V|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Ribosomal protein paralogs bL31 and bL36 | X-ray diffraction | 2.9 | 2018-12-05 |
9 | 5J91|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
10 | 4V9P|1|EA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
11 | 5J88|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
12 | 4V9P|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
13 | 4V9P|1|GA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
14 | 4V9P|1|AA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
15 | 6LKQ|1|t | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin | X-ray diffraction | 3.1 | 2020-05-06 |
16 | 4V9D|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
17 | 4V9O|1|AA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
18 | 4V9O|1|EA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
19 | 4WWW|1|RA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
20 | 4V9O|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
21 | 4V6C|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
22 | 5J7L|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
23 | 4V7T|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
24 | 4U27|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
25 | 4WF1|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
26 | 5J8A|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
27 | 5JC9|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
28 | 4V7U|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
29 | 4V7V|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
30 | 4V52|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
31 | 4U24|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
32 | 4U25|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
33 | 4V9D|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
34 | 4U26|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
35 | 4V7S|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
36 | 4V57|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
37 | 4V52|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
38 | 4V57|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
39 | 4V9O|1|GA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
40 | 4U1U|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
41 | 4V85|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-ray diffraction | 3.2 | 2014-07-09 |
42 | 4V54|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
43 | 4V64|1|DB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
44 | 4V50|1|DB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
45 | 4V54|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
46 | 4V64|1|BB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
47 | 6BY1|1|CA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
48 | 4V53|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | X-ray diffraction | 3.54 | 2014-07-09 |
49 | 4V50|1|BB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
50 | 4YBB|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
51 | 4U1V|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
52 | 5J88|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
53 | 4V53|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | X-ray diffraction | 3.54 | 2014-07-09 |
54 | 4V9C|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
55 | 4V56|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | X-ray diffraction | 3.93 | 2014-07-09 |
56 | 4U20|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
57 | 4V56|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | X-ray diffraction | 3.93 | 2014-07-09 |
58 | 6I7V|1|CA | Large subunit ribosomal RNA | 23S ribsomal RNA | Escherichia coli | Bacteria | RF02541 | Ribosomal protein paralogs bL31 and bL36 | X-ray diffraction | 2.9 | 2018-12-05 |
59 | 6BY1|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
60 | 4U27|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
61 | 4V55|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | X-ray diffraction | 4 | 2014-07-09 |
62 | 4V4Q|1|DB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
63 | 4V55|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | X-ray diffraction | 4 | 2014-07-09 |
64 | 4V4Q|1|BB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
65 | 4V6D|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.81 | 2014-07-09 |
66 | 4U25|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
67 | 4U1U|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
68 | 4V9C|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
69 | 4U1V|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
70 | 4V89|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) | X-ray diffraction | 3.7 | 2014-07-09 |
71 | 5IT8|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
72 | 4V6E|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 |
73 | 4WF1|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
74 | 4U24|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
75 | 4U26|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
76 | 4U20|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
77 | 4V6C|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
78 | 4V5Y|1|DB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). | X-ray diffraction | 4.45 | 2014-07-09 |
79 | 5J91|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
80 | 4WWW|1|YA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
81 | 4V7T|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
82 | 4V5Y|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). | X-ray diffraction | 4.45 | 2014-07-09 |
83 | 4V6D|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.81 | 2014-07-09 |
84 | 4V7V|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
85 | 4V7S|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
86 | 4V7U|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
87 | 4V6E|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 |
88 | 4V5B|1|CB | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | Structure of PDF binding helix in complex with the ribosome | X-ray diffraction | 3.74 | 2014-07-09 |
89 | 4V5B|1|AB | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | Structure of PDF binding helix in complex with the ribosome | X-ray diffraction | 3.74 | 2014-07-09 |
90 | 5J5B|1|DA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
91 | 4V4H|1|DB | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
92 | 4V4H|1|BB | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
93 | 5J5B|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
94 | 6HRM|1|1 | Small subunit ribosomal RNA | stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA | Escherichia coli | Bacteria | RF00177 | E. coli 70S d2d8 stapled ribosome | Electron microscopy | 2.96 | 2018-12-19 |
95 | 8B0X|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli B | Bacteria | RF02541 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 2022-11-30 |
96 | 8CGK|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Lincomycin and Avilamycin bound to the 50S subunit | Electron microscopy | 1.64 | 2023-07-19 |
97 | 8CGV|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Tiamulin bound to the 50S subunit | Electron microscopy | 1.66 | 2023-08-02 |
98 | 8CEU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Retapamulin and Capreomycin bound to the 50S subunit | Electron microscopy | 1.83 | 2023-07-26 |
99 | 8FTO|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 2023-08-02 |
100 | 8E30|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | Electron microscopy | 1.91 | 2023-06-28 |
101 | 8CAM|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Evernimicin bound to the 50S subunit | Electron microscopy | 1.86 | 2023-07-26 |
102 | 8AYE|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 2023-03-01 |
103 | 8E3O|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to solithromycin and VM1 | Electron microscopy | 1.99 | 2023-06-28 |
104 | 7K00|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2020-09-23 |
105 | 8CGD|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Clindamycin bound to the 50S subunit | Electron microscopy | 1.98 | 2023-07-26 |
106 | 8E49|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC31 | Electron microscopy | 2.05 | 2023-06-28 |
107 | 8QOA|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 2024-03-20 |
108 | 8G6W|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.02 | 2023-04-05 |
109 | 7QQ3|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A. | Electron microscopy | 2.1 | 2023-01-18 |
110 | 8BIM|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site | Electron microscopy | 2.04 | 2023-08-16 |
111 | 8E43|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3336 | Electron microscopy | 2.09 | 2023-06-28 |
112 | 7ZP8|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | Electron microscopy | 2.2 | 2022-08-10 |
113 | 8BIL|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. | Electron microscopy | 2.04 | 2023-08-16 |
114 | 8G6Y|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe | Electron microscopy | 2.09 | 2023-04-05 |
115 | 8E41|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to tiamulin and VS1 | Electron microscopy | 2.13 | 2023-06-28 |
116 | 8EMM|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | Electron microscopy | 2.1 | 2023-05-31 |
117 | 6XZ7|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | Electron microscopy | 2.1 | 2020-07-22 |
118 | 8QBT|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 2024-03-20 |
119 | 8ANA|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit | Electron microscopy | 2.1 | 2023-03-08 |
120 | 8BGE|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.11 | 2023-08-16 |
121 | 7LVK|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cfr-modified 50S subunit from Escherichia coli | Electron microscopy | 2.2 | 2021-12-15 |
122 | 7Z20|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.29 | 2022-08-10 |
123 | 6PJ6|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High resolution cryo-EM structure of E.coli 50S | Electron microscopy | 2.2 | 2020-01-22 |
124 | 8E35|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound SAB002 | Electron microscopy | 2.27 | 2023-06-28 |
125 | 8E48|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC30 | Electron microscopy | 2.27 | 2023-06-28 |
126 | 7N1P|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation | Electron microscopy | 2.33 | 2021-07-14 |
127 | 8R6C|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA. | Electron microscopy | 2.2 | 2024-07-24 |
128 | 8E33|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin analog SAB001 | Electron microscopy | 2.23 | 2023-06-28 |
129 | 8BHL|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.21 | 2023-08-16 |
130 | 7PJS|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C) | Electron microscopy | 2.35 | 2021-10-20 |
131 | 8E3M|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to L-linker solithromycin conjugate | Electron microscopy | 2.25 | 2023-06-28 |
132 | 7S1H|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Wild-type Escherichia coli ribosome with antibiotic linezolid | Electron microscopy | 2.35 | 2021-11-17 |
133 | 8E47|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC26 | Electron microscopy | 2.32 | 2023-06-28 |
134 | 8E45|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC17 | Electron microscopy | 2.3 | 2023-06-28 |
135 | 8EIU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | Electron microscopy | 2.24 | 2023-02-01 |
136 | 8E42|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to tiamulin and azithromycin | Electron microscopy | 2.29 | 2023-06-28 |
137 | 8E46|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC21 | Electron microscopy | 2.32 | 2023-06-28 |
138 | 8E32|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1 | Electron microscopy | 2.35 | 2023-06-28 |
139 | 8E3L|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to D-linker solithromycin conjugate | Electron microscopy | 2.35 | 2023-06-28 |
140 | 8RQ2|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III | Electron microscopy | 2.44 | 2024-05-22 |
141 | 8RQ0|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II | Electron microscopy | 2.44 | 2024-05-22 |
142 | 8RPZ|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I | Electron microscopy | 2.44 | 2024-05-22 |
143 | 7S1K|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid | Electron microscopy | 2.42 | 2022-01-19 |
144 | 7O1A|1|BA | Large subunit ribosomal RNA | Ribosomal RNA 23S | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.4 | 2021-09-01 |
145 | 8AKN|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome | Electron microscopy | 2.3 | 2023-03-08 |
146 | 8BF7|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.33 | 2023-08-16 |
147 | 8G6X|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.31 | 2023-03-22 |
148 | 8HSP|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | Electron microscopy | 2.32 | 2024-04-03 |
149 | 7S1J|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Wild-type Escherichia coli ribosome with antibiotic radezolid | Electron microscopy | 2.47 | 2022-03-02 |
150 | 7Y7G|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) | Electron microscopy | 2.34 | 2023-10-25 |
151 | 7S1I|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Wild-type Escherichia coli stalled ribosome with antibiotic radezolid | Electron microscopy | 2.48 | 2022-03-02 |
152 | 7S1G|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | wild-type Escherichia coli stalled ribosome with antibiotic linezolid | Electron microscopy | 2.48 | 2021-11-17 |
153 | 8E36|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3146 | Electron microscopy | 2.38 | 2023-06-28 |
154 | 8BHP|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.37 | 2023-08-16 |
155 | 7BL4|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle | Electron microscopy | 2.4 | 2021-05-12 |
156 | 7YLA|1|I | Large subunit ribosomal RNA | Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of 50S-HflX complex | Electron microscopy | 2.52 | 2023-01-04 |
157 | 7N2U|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation | Electron microscopy | 2.53 | 2021-07-14 |
158 | 9FBV|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | 70S Escherichia coli ribosome with P-site initiatior tRNA. | Electron microscopy | 2.4 | 2024-06-26 |
159 | 8HTZ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | Electron microscopy | 2.4 | 2024-04-03 |
160 | 7N2V|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1) | Electron microscopy | 2.54 | 2021-07-14 |
161 | 8W51|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of YchF(H114A) on E.coli 50S ribosomal subunit | Electron microscopy | 2.4 | 2024-08-28 |
162 | 7ZOD|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia | Electron microscopy | 2.56 | 2022-08-10 |
163 | 7Y7E|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.41 | 2023-10-25 |
164 | 8R8M|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. | Electron microscopy | 2.4 | 2024-07-24 |
165 | 7SA4|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Damaged 70S ribosome with PrfH bound | Electron microscopy | 2.55 | 2022-08-03 |
166 | 8IFB|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Dibekacin-bound E.coli 70S ribosome in the PURE system | Electron microscopy | 2.43 | 2024-02-14 |
167 | 7Y7F|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC) | Electron microscopy | 2.43 | 2023-10-25 |
168 | 6YS3|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide | Electron microscopy | 2.58 | 2020-09-30 |
169 | 7UG7|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B | Electron microscopy | 2.58 | 2022-05-18 |
170 | 6YSS|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state | Electron microscopy | 2.6 | 2020-08-19 |
171 | 9AX8|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon) | Electron microscopy | 2.6 | 2024-09-18 |
172 | 6PCR|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 40o | Electron microscopy | 2.5 | 2020-06-17 |
173 | 6PC6|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 47 | Electron microscopy | 2.5 | 2020-06-17 |
174 | 6PC7|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 46 | Electron microscopy | 2.5 | 2020-06-17 |
175 | 7Y7C|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU) | Electron microscopy | 2.51 | 2023-10-25 |
176 | 7Y7H|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC) | Electron microscopy | 2.51 | 2023-10-25 |
177 | 8E44|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC09 | Electron microscopy | 2.53 | 2023-06-28 |
178 | 7NWT|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV) | Electron microscopy | 2.66 | 2021-12-15 |
179 | 7N30|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation | Electron microscopy | 2.66 | 2021-07-14 |
180 | 6XZB|1|A2 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.54 | 2020-11-04 |
181 | 7ZQ5|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with truncated uL23 and uL24 loops | Electron microscopy | 2.7 | 2022-08-10 |
182 | 7N31|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a post-translocation (POST) conformation | Electron microscopy | 2.69 | 2021-07-14 |
183 | 7O1C|1|BA | Large subunit ribosomal RNA | Ribosomal RNA 23S | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | Electron microscopy | 2.6 | 2021-09-01 |
184 | 7ZTA|1|23S1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide | Electron microscopy | 2.7 | 2023-04-12 |
185 | 6TBV|1|23S1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2) | Electron microscopy | 2.7 | 2020-01-01 |
186 | 6TC3|1|23S1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1) | Electron microscopy | 2.7 | 2020-01-01 |
187 | 7Y7D|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | Electron microscopy | 2.58 | 2023-10-25 |
188 | 9CG5|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S initiation complex (tRNA-fMet M1 + UUG start codon) | Electron microscopy | 2.59 | 2024-09-18 |
189 | 8RPY|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137 | Electron microscopy | 2.64 | 2024-05-22 |
190 | 8BH4|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.62 | 2023-08-16 |
191 | 7ZQ6|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.75 | 2022-08-10 |
192 | 6PCQ|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to VM2 | Electron microscopy | 2.6 | 2020-06-17 |
193 | 7N2C|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2) | Electron microscopy | 2.72 | 2021-07-14 |
194 | 9CG6|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S initiation complex (tRNA-fMet M1 + GUG start codon) | Electron microscopy | 2.61 | 2024-09-18 |
195 | 8EKC|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA | Electron microscopy | 2.7 | 2022-12-07 |
196 | 9AX7|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S initiation complex (tRNA-fMet M1 + CUG start codon) | Electron microscopy | 2.63 | 2024-09-18 |
197 | 8P16|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E167K RF2 on E. coli 70S release complex with UGG (Structure I) | Electron microscopy | 2.77 | 2024-05-22 |
198 | 8P18|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E167K RF2 on E. coli 70S release complex with UGG (Structure III) | Electron microscopy | 2.77 | 2024-05-22 |
199 | 8QK7|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E167K RF2 on E. coli 70S release complex with UAA | Electron microscopy | 2.77 | 2024-09-25 |
200 | 8P17|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E167K RF2 on E. coli 70S release complex with UGG (Structure II) | Electron microscopy | 2.78 | 2024-05-22 |
201 | 6XZA|1|A2 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.66 | 2020-11-04 |
202 | 7M5D|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) | Electron microscopy | 2.8 | 2022-10-19 |
203 | 8G7R|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) | Electron microscopy | 2.8 | 2024-03-06 |
204 | 7UPH|1|I | Small subunit ribosomal RNA | Tethered rRNA | Escherichia coli | Bacteria | RF00177 | Structure of a ribosome with tethered subunits | Electron microscopy | 4.18 | 2022-08-17 |
205 | 6QDW|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide | Electron microscopy | 2.83 | 2020-01-15 |
206 | 8HU1|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state | Electron microscopy | 2.69 | 2024-04-03 |
207 | 6PC5|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compounds 46 and VS1 | Electron microscopy | 2.7 | 2020-06-17 |
208 | 7NSO|1|A | Large subunit ribosomal RNA | 23S rRNA (2903-MER) | Escherichia coli | Bacteria | RF02541 | Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA | Electron microscopy | 2.9 | 2021-07-14 |
209 | 7ST2|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | Electron microscopy | 2.9 | 2022-02-23 |
210 | 9CG7|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S initiation complex (tRNA-fMet M1 + AUG start codon) | Electron microscopy | 2.75 | 2024-09-18 |
211 | 7OT5|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | CspA-70 cotranslational folding intermediate 1 | Electron microscopy | 2.9 | 2022-01-19 |
212 | 7OTC|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BL21(DE3) | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B | Electron microscopy | 2.9 | 2022-05-11 |
213 | 8FZH|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D) | Electron microscopy | 2.9 | 2024-07-17 |
214 | 8G7P|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) | Electron microscopy | 2.9 | 2024-03-06 |
215 | 7B5K|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain. | Electron microscopy | 2.9 | 2021-05-26 |
216 | 8BHJ|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.81 | 2023-08-16 |
217 | 6WYV|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compounds 47 and VS1 | Electron microscopy | 2.75 | 2020-06-17 |
218 | 8AM9|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome | Electron microscopy | 2.8 | 2023-03-08 |
219 | 6PCT|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 41q | Electron microscopy | 2.8 | 2020-06-17 |
220 | 6U48|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S with phazolicin (PHZ) bound in exit tunnel | Electron microscopy | 2.87 | 2019-09-18 |
221 | 8J1Z|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | The global structure of pre50S related to DbpA in state3 | Electron microscopy | 2.6 | 2024-04-24 |
222 | 6Y69|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX | Electron microscopy | 2.86 | 2020-07-01 |
223 | 8SYL|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | Electron microscopy | 2.9 | 2023-08-09 |
224 | 6PCS|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 40e | Electron microscopy | 2.8 | 2020-06-17 |
225 | 7O19|1|BA | Large subunit ribosomal RNA | Ribosomal RNA 23S | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.9 | 2021-09-01 |
226 | 7ST6|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre translocation, non-rotated 70S ribosome (Structure I) | Electron microscopy | 3 | 2022-02-23 |
227 | 7TOS|1|23S | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.9 | 2022-05-25 |
228 | 5AFI|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
229 | 6WNT|1|4 | 23s-5s joint ribosomal RNA | 23s-5s joint ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 50S ribosomal subunit without free 5S rRNA and perturbed PTC | Electron microscopy | 3.1 | 2020-06-24 |
230 | 8BGH|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.88 | 2023-08-16 |
231 | 5NWY|1|N | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | Electron microscopy | 2.9 | 2017-07-19 |
232 | 6WD0|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | Electron microscopy | 3 | 2020-07-01 |
233 | 7OII|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | CspA-70 cotranslational folding intermediate 2 | Electron microscopy | 3 | 2022-01-19 |
234 | 7OIF|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | CspA-27 cotranslational folding intermediate 2 | Electron microscopy | 3 | 2022-01-19 |
235 | 6WDE|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | Electron microscopy | 3 | 2020-07-01 |
236 | 8B7Y|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B. | Electron microscopy | 3 | 2023-01-25 |
237 | 8FZE|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A) | Electron microscopy | 3 | 2024-07-17 |
238 | 8FZJ|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C) | Electron microscopy | 3 | 2024-07-17 |
239 | 8BHN|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.85 | 2023-08-16 |
240 | 5H5U|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Mechanistic insights into the alternative translation termination by ArfA and RF2 | Electron microscopy | 3.01 | 2017-01-25 |
241 | 7OIZ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of 70S ribosome stalled with TnaC peptide | Electron microscopy | 2.9 | 2021-09-15 |
242 | 7P3K|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control) | Electron microscopy | 2.9 | 2021-10-27 |
243 | 8IFC|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Arbekacin-bound E.coli 70S ribosome in the PURE system | Electron microscopy | 2.9 | 2024-02-14 |
244 | 7NWW|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | CspA-27 cotranslational folding intermediate 1 | Electron microscopy | 3.05 | 2022-01-19 |
245 | 6ORE|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Release complex 70S | Electron microscopy | 2.9 | 2019-06-19 |
246 | 7Q4K|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain | Electron microscopy | 3 | 2022-11-16 |
247 | 6PC8|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 40q | Electron microscopy | 2.9 | 2020-06-17 |
248 | 5MDV|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
249 | 8G2U|1|B | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms | Electron microscopy | 3 | 2023-12-06 |
250 | 6H4N|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | Electron microscopy | 3 | 2018-09-05 |
251 | 7AC7|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of accomodated trans-translation complex on E. Coli stalled ribosome. | Electron microscopy | 3.08 | 2021-08-18 |
252 | 7NSQ|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | Electron microscopy | 3.1 | 2021-07-14 |
253 | 6WNW|1|4 | 23s-5s joint ribosomal RNA | 23s-5s joint ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA | Electron microscopy | 3.2 | 2020-06-24 |
254 | 6ZTP|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in uncoupled state 6 | Electron microscopy | 3 | 2020-09-16 |
255 | 6ZU1|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in uncoupled state 2 | Electron microscopy | 3 | 2020-09-16 |
256 | 6ZTO|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in uncoupled state 1 | Electron microscopy | 3 | 2020-09-23 |
257 | 6PCH|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 21 | Electron microscopy | 2.9 | 2020-06-17 |
258 | 8PKL|1|7 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state) | Electron microscopy | 3.09 | 2024-03-06 |
259 | 6OM6|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA | Electron microscopy | 3.1 | 2021-02-10 |
260 | 8URY|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome | Electron microscopy | 3.1 | 2024-06-12 |
261 | 6X7K|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.1 | 2020-09-02 |
262 | 6YSR|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the P+9 stalled ribosome complex | Electron microscopy | 3.1 | 2020-08-19 |
263 | 7PJY|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP) | Electron microscopy | 3.1 | 2021-10-20 |
264 | 7PJV|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi) | Electron microscopy | 3.1 | 2021-10-20 |
265 | 8FZI|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B) | Electron microscopy | 3.1 | 2024-07-17 |
266 | 8FZG|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A) | Electron microscopy | 3.1 | 2024-07-17 |
267 | 8G7S|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) | Electron microscopy | 3.1 | 2024-03-06 |
268 | 8FZD|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B) | Electron microscopy | 3.1 | 2024-07-17 |
269 | 8G7Q|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) | Electron microscopy | 3.1 | 2024-03-06 |
270 | 7NBU|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. | Electron microscopy | 3.11 | 2022-03-02 |
271 | 8AP4|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA | Electron microscopy | 3 | 2022-11-16 |
272 | 5MDW|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.06 | 2016-12-14 |
273 | 6SZS|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | Electron microscopy | 3.06 | 2019-12-04 |
274 | 5MGP|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
275 | 7K54|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | Electron microscopy | 3.2 | 2021-07-28 |
276 | 7K53|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | Electron microscopy | 3.2 | 2021-07-28 |
277 | 7SSN|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | Electron microscopy | 3.2 | 2022-02-23 |
278 | 7LV0|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | Electron microscopy | 3.2 | 2021-07-28 |
279 | 7SSO|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | Electron microscopy | 3.2 | 2022-02-23 |
280 | 7ST7|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | Electron microscopy | 3.2 | 2022-02-23 |
281 | 8G34|1|B | Large subunit ribosomal RNA | 23S | Escherichia coli | Bacteria | RF02541 | Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate | Electron microscopy | 3.2 | 2023-12-06 |
282 | 8G38|1|B | Large subunit ribosomal RNA | 23S | Escherichia coli | Bacteria | RF02541 | Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate | Electron microscopy | 3.2 | 2023-12-06 |
283 | 5MDZ|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome (empty A site) | Electron microscopy | 3.1 | 2016-12-14 |
284 | 6S0K|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA, tRNA-CCA | Escherichia coli | Bacteria | RF02541 | Ribosome nascent chain in complex with SecA | Electron microscopy | 3.1 | 2019-10-09 |
285 | 5U9G|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | Electron microscopy | 3.2 | 2017-03-22 |
286 | 5U9F|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | Electron microscopy | 3.2 | 2017-03-22 |
287 | 6WDD|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A) | Electron microscopy | 3.2 | 2020-07-01 |
288 | 5UYM|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
289 | 7OIG|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | CspA-27 cotranslational folding intermediate 3 | Electron microscopy | 3.2 | 2022-01-19 |
290 | 7ACJ|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of translocated trans-translation complex on E. coli stalled ribosome. | Electron microscopy | 3.2 | 2021-08-18 |
291 | 6ENU|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | Electron microscopy | 3.1 | 2017-11-22 |
292 | 8UQL|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 3.2 | 2024-05-29 |
293 | 6X6T|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.2 | 2020-09-02 |
294 | 6YST|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state | Electron microscopy | 3.2 | 2020-08-19 |
295 | 8FZF|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C) | Electron microscopy | 3.2 | 2024-06-26 |
296 | 7ABZ|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome. | Electron microscopy | 3.21 | 2021-08-18 |
297 | 6QUL|1|A | Large subunit ribosomal RNA | 23S rRNA, P-site fMet-tRNA(fMet) | Escherichia coli | Bacteria | RF02541 | Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid | Electron microscopy | 3 | 2019-04-10 |
298 | 8Q4F|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of arbekacin bound Escherichia coli 70S ribosome | Electron microscopy | 3.1 | 2024-08-14 |
299 | 6VWL|1|2 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation) | Electron microscopy | 3.1 | 2020-06-03 |
300 | 5WFS|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
301 | 8T5D|1|B | Large subunit ribosomal RNA | 23S RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation | Electron microscopy | 3.2 | 2024-08-28 |
302 | 7BL5|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli str. K-12 substr. MG1655 | Bacteria | RF02541 | pre-50S-ObgE particle | Electron microscopy | 3.3 | 2021-05-12 |
303 | 8R3V|1|72 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (non-rotated disome interface) | Electron microscopy | 3.28 | 2024-03-06 |
304 | 7K55|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | Electron microscopy | 3.3 | 2021-07-28 |
305 | 7JT1|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) | Electron microscopy | 3.3 | 2020-11-11 |
306 | 8T5H|1|B | Large subunit ribosomal RNA | 23S | Escherichia coli | Bacteria | RF02541 | Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation | Electron microscopy | 3.3 | 2024-08-28 |
307 | 7SSD|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | Electron microscopy | 3.3 | 2022-02-23 |
308 | 6WDG|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B) | Electron microscopy | 3.3 | 2020-07-01 |
309 | 8G31|1|B | Large subunit ribosomal RNA | 23S | Escherichia coli | Bacteria | RF02541 | Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate | Electron microscopy | 3.2 | 2023-12-06 |
310 | 6WDF|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A) | Electron microscopy | 3.3 | 2020-07-01 |
311 | 6WD1|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B) | Electron microscopy | 3.3 | 2020-07-01 |
312 | 6OG7|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II) | Electron microscopy | 3.3 | 2019-09-25 |
313 | 5WE4|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome-EF-Tu wt complex with GppNHp | Electron microscopy | 3.1 | 2018-04-25 |
314 | 6OFX|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Non-rotated ribosome (Structure I) | Electron microscopy | 3.3 | 2019-09-25 |
315 | 8PEG|1|7 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state) | Electron microscopy | 3.3 | 2024-03-06 |
316 | 3JBV|1|b | Large subunit ribosomal RNA | RNA (2903-MER) | Escherichia coli | Bacteria | RF02541 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
317 | 7CPJ|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | ycbZ-stalled 70S ribosome | Electron microscopy | 3.3 | 2021-12-08 |
318 | 6C4I|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | Electron microscopy | 3.24 | 2018-02-21 |
319 | 5WDT|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
320 | 7QGN|1|N | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the SmrB-bound E. coli disome - stalled 70S ribosome | Electron microscopy | 3.37 | 2022-04-27 |
321 | 7BV8|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Mature 50S ribosomal subunit from RrmJ knock out E.coli strain | Electron microscopy | 3.14 | 2020-07-01 |
322 | 6ENF|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | Electron microscopy | 3.2 | 2017-11-22 |
323 | 7K50|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | Electron microscopy | 3.4 | 2021-07-28 |
324 | 7K52|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | Electron microscopy | 3.4 | 2021-07-28 |
325 | 6WNV|1|4 | 23s-5s joint ribosomal RNA | 23s-5s joint ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome without free 5S rRNA and with a perturbed PTC | Electron microscopy | 3.5 | 2020-06-24 |
326 | 6OGI|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V) | Electron microscopy | 3.4 | 2019-09-25 |
327 | 8UR0|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 3.4 | 2024-05-29 |
328 | 5GAE|1|A | Large subunit ribosomal RNA | 23S rRNA, tRNA CCA end (5'-R(P*CP*CP*A)-3') | Escherichia coli | Bacteria | RF02541 | RNC in complex with a translocating SecYEG | Electron microscopy | 3.33 | 2016-01-27 |
329 | 8A3L|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structural insights into the binding of bS1 to the ribosome | Electron microscopy | 3.42 | 2023-05-10 |
330 | 3JCE|1|A | Large subunit ribosomal RNA | 23 ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
331 | 7ACR|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of post-translocated trans-translation complex on E. coli stalled ribosome. | Electron microscopy | 3.44 | 2021-08-18 |
332 | 5MDY|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.35 | 2016-12-21 |
333 | 5LZD|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 |
334 | 7D6Z|1|A | Large subunit ribosomal RNA | 23S ribosomal rRNA | Escherichia coli | Bacteria | RF02541 | Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor | Electron microscopy | 3.4 | 2021-04-07 |
335 | 6ZTM|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in collided state without NusG | Electron microscopy | 3.3 | 2020-09-16 |
336 | 5WE6|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | Electron microscopy | 3.4 | 2018-04-25 |
337 | 6I0Y|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel | Electron microscopy | 3.2 | 2018-12-05 |
338 | 7NSP|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | Electron microscopy | 3.5 | 2021-08-11 |
339 | 7JT2|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | 70S ribosome stalled on long mRNA with ArfB bound in the A site | Electron microscopy | 3.5 | 2020-11-11 |
340 | 7K51|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | Electron microscopy | 3.5 | 2021-07-28 |
341 | 8RCL|1|72 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Non-rotated disome interface class 1) | Electron microscopy | 3.49 | 2024-03-13 |
342 | 6X7F|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.5 | 2020-09-02 |
343 | 6BU8|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome with S1 domains 1 and 2 (Class 1) | Electron microscopy | 3.5 | 2018-01-31 |
344 | 5WFK|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | Electron microscopy | 3.4 | 2018-05-02 |
345 | 5O2R|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome | Electron microscopy | 3.4 | 2017-07-26 |
346 | 5LZE|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | Electron microscopy | 3.5 | 2016-11-23 |
347 | 8C8Y|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.03 | 2023-04-05 |
348 | 6ZTJ|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA) | Electron microscopy | 3.4 | 2020-09-16 |
349 | 5U4I|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.5 | 2017-01-11 |
350 | 6VWN|1|2 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II) | Electron microscopy | 3.4 | 2020-06-03 |
351 | 6VWM|1|2 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I) | Electron microscopy | 3.4 | 2020-06-03 |
352 | 5UYL|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | Electron microscopy | 3.6 | 2017-06-14 |
353 | 6WD2|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A) | Electron microscopy | 3.6 | 2020-07-08 |
354 | 6WDK|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) | Electron microscopy | 3.6 | 2020-07-08 |
355 | 6WD5|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1) | Electron microscopy | 3.6 | 2020-07-08 |
356 | 6WDM|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2) | Electron microscopy | 3.6 | 2020-07-01 |
357 | 6WD3|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1) | Electron microscopy | 3.6 | 2020-07-08 |
358 | 7OJ0|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2 | Electron microscopy | 3.5 | 2021-09-15 |
359 | 8RCM|1|72 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Non-rotated disome interface class 2) | Electron microscopy | 3.59 | 2024-03-06 |
360 | 5IQR|1|1 | Large subunit ribosomal RNA | LSU rRNA | Escherichia coli | Bacteria | RF02541 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
361 | 6OSQ|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | RF1 accommodated state bound Release complex 70S at long incubation time point | Electron microscopy | 3.5 | 2019-06-26 |
362 | 3JBU|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.64 | 2016-01-27 |
363 | 5LZA|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) | Electron microscopy | 3.6 | 2016-11-23 |
364 | 5KCR|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | Electron microscopy | 3.6 | 2016-08-17 |
365 | 5JU8|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA | Electron microscopy | 3.6 | 2016-07-20 |
366 | 5JTE|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | Electron microscopy | 3.6 | 2016-07-20 |
367 | 7JT3|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) | Electron microscopy | 3.7 | 2020-11-11 |
368 | 7JSZ|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) | Electron microscopy | 3.7 | 2020-11-11 |
369 | 7JSS|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) | Electron microscopy | 3.7 | 2020-11-11 |
370 | 6WDJ|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1) | Electron microscopy | 3.7 | 2020-07-01 |
371 | 6WD4|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2) | Electron microscopy | 3.7 | 2020-07-08 |
372 | 6WD8|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A) | Electron microscopy | 3.7 | 2020-07-08 |
373 | 6WD6|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) | Electron microscopy | 3.7 | 2020-07-08 |
374 | 7BL3|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | pre-50S-ObgE particle state 2 | Electron microscopy | 3.5 | 2021-05-12 |
375 | 6WD9|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) | Electron microscopy | 3.7 | 2020-07-08 |
376 | 6WDL|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) | Electron microscopy | 3.7 | 2020-07-01 |
377 | 6XDQ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.7 | 2020-09-02 |
378 | 6VYS|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.7 | 2020-09-02 |
379 | 6VU3|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer | Electron microscopy | 3.7 | 2020-09-02 |
380 | 6VYQ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.7 | 2020-09-02 |
381 | 6YSU|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state | Electron microscopy | 3.7 | 2020-08-19 |
382 | 6ORL|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | RF1 pre-accommodated 70S complex at 24 ms | Electron microscopy | 3.5 | 2019-06-19 |
383 | 8PHJ|1|a | Large subunit ribosomal RNA | 23S rRNA (2862-MER) | Escherichia coli | Bacteria | RF02541 | cA4-bound Cami1 in complex with 70S ribosome | Electron microscopy | 3.67 | 2023-12-13 |
384 | 6OSK|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | RF1 accommodated 70S complex at 60 ms | Electron microscopy | 3.6 | 2019-06-26 |
385 | 3J9Z|1|LA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
386 | 6DNC|1|B | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon | Electron microscopy | 3.7 | 2018-07-04 |
387 | 3JCJ|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | Electron microscopy | 3.7 | 2016-03-09 |
388 | 5WF0|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | Electron microscopy | 3.6 | 2018-05-02 |
389 | 7ODE|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | E. coli 50S ribosome LiCl core particle | Electron microscopy | 2.84 | 2022-06-01 |
390 | 7JSW|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) | Electron microscopy | 3.8 | 2020-11-11 |
391 | 7SSL|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) | Electron microscopy | 3.8 | 2022-02-23 |
392 | 7SSW|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Late translocation intermediate with EF-G dissociated (Structure VI) | Electron microscopy | 3.8 | 2022-02-23 |
393 | 5UYQ|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | Electron microscopy | 3.8 | 2017-06-07 |
394 | 6WDA|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C) | Electron microscopy | 3.8 | 2020-07-08 |
395 | 8UQP|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 3.8 | 2024-05-29 |
396 | 6VYR|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.8 | 2020-09-02 |
397 | 6ENJ|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
398 | 6Q9A|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome | Electron microscopy | 3.7 | 2019-04-17 |
399 | 5L3P|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex | Electron microscopy | 3.7 | 2016-07-20 |
400 | 5GAD|1|A | Large subunit ribosomal RNA | 23S rRNA, tRNA CCAend | Escherichia coli | Bacteria | RF02541 | RNC-SRP-SR complex early state | Electron microscopy | 3.7 | 2016-01-27 |
401 | 6GC8|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 50S ribosomal subunit assembly intermediate - 50S rec* | Electron microscopy | 3.8 | 2018-06-20 |
402 | 5UYP|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | Electron microscopy | 3.9 | 2017-06-07 |
403 | 7SS9|1|1 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Late translocation intermediate with EF-G partially dissociated (Structure V) | Electron microscopy | 3.9 | 2022-02-23 |
404 | 5UYK|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | Electron microscopy | 3.9 | 2017-06-07 |
405 | 6OGF|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III). | Electron microscopy | 3.9 | 2019-09-25 |
406 | 6WD7|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D) | Electron microscopy | 3.9 | 2020-07-08 |
407 | 6ZTL|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in collided state bound to NusG | Electron microscopy | 3.5 | 2020-09-16 |
408 | 8VSA|1|23S | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome | Electron microscopy | 3.7 | 2024-05-01 |
409 | 7BL2|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | pre-50S-ObgE particle state 1 | Electron microscopy | 3.7 | 2021-05-12 |
410 | 6GWT|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I) | Electron microscopy | 3.8 | 2018-08-15 |
411 | 6OUO|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | RF2 accommodated state bound 70S complex at long incubation time | Electron microscopy | 3.7 | 2019-06-19 |
412 | 5KPW|1|27 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | Electron microscopy | 3.9 | 2016-09-28 |
413 | 6GXM|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II) | Electron microscopy | 3.8 | 2018-08-22 |
414 | 5GAG|1|A | Large subunit ribosomal RNA | 23S rRNA, tRNA CCAend | Escherichia coli | Bacteria | RF02541 | RNC in complex with SRP-SR in the closed state | Electron microscopy | 3.8 | 2016-01-27 |
415 | 5GAH|1|A | Large subunit ribosomal RNA | 23S rRNA, tRNA CCAend | Escherichia coli | Bacteria | RF02541 | RNC in complex with SRP with detached NG domain | Electron microscopy | 3.8 | 2016-01-27 |
416 | 6GBZ|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 50S ribosomal subunit assembly intermediate state 5 | Electron microscopy | 3.8 | 2018-06-20 |
417 | 7QG8|1|N | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | Electron microscopy | 3.97 | 2022-03-16 |
418 | 5KPS|1|28 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | Electron microscopy | 3.9 | 2016-09-28 |
419 | 5UYN|1|01 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | Electron microscopy | 4 | 2017-06-07 |
420 | 6WDI|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) | Electron microscopy | 4 | 2020-07-01 |
421 | 6WDB|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A) | Electron microscopy | 4 | 2020-07-01 |
422 | 6GC0|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 50S ribosomal subunit assembly intermediate state 4 | Electron microscopy | 3.8 | 2018-06-20 |
423 | 3J9Y|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome | Electron microscopy | 3.9 | 2015-04-15 |
424 | 7PJW|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi) | Electron microscopy | 4 | 2021-10-20 |
425 | 6GXO|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV) | Electron microscopy | 3.9 | 2018-08-15 |
426 | 8C8Z|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.12 | 2023-04-05 |
427 | 6GXN|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III) | Electron microscopy | 3.9 | 2018-08-15 |
428 | 6O9K|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S initiation complex | Electron microscopy | 4 | 2019-05-29 |
429 | 6O9J|1|B | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S Elongation Competent Ribosome | Electron microscopy | 3.9 | 2019-05-29 |
430 | 5KPX|1|27 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | Electron microscopy | 3.9 | 2016-09-28 |
431 | 3JCD|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | Electron microscopy | 3.7 | 2016-01-13 |
432 | 4UY8|1|A | Large subunit ribosomal RNA | RRNA-23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome | Electron microscopy | 3.8 | 2014-10-29 |
433 | 7D80|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase | Electron microscopy | 4.1 | 2021-04-07 |
434 | 5KCS|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution | Electron microscopy | 3.9 | 2016-08-17 |
435 | 6VZJ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG | Electron microscopy | 4.1 | 2020-09-02 |
436 | 8VS9|1|23S | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome | Electron microscopy | 3.9 | 2024-05-01 |
437 | 6OT3|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | RF2 accommodated state bound Release complex 70S at 24 ms | Electron microscopy | 3.9 | 2019-06-19 |
438 | 6Q97|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | Electron microscopy | 3.9 | 2019-03-13 |
439 | 8FIZ|1|BA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex) | Electron microscopy | 3.8 | 2023-03-29 |
440 | 6ZTN|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) | Electron microscopy | 3.9 | 2020-09-16 |
441 | 8C90|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.15 | 2023-04-05 |
442 | 6OGG|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV). | Electron microscopy | 4.2 | 2019-09-25 |
443 | 6WDC|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B) | Electron microscopy | 4.2 | 2020-07-01 |
444 | 7BL6|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | 50S-ObgE-GMPPNP particle | Electron microscopy | 4 | 2021-05-12 |
445 | 3J7Z|1|A | Large subunit ribosomal RNA | 23S rRNA, P-tRNA CCA-end | Escherichia coli | Bacteria | RF02541 | Structure of the E. coli 50S subunit with ErmCL nascent chain | Electron microscopy | 3.9 | 2014-10-22 |
446 | 5NP6|1|Y | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S structure prior to bypassing | Electron microscopy | 3.6 | 2017-06-14 |
447 | 6WDH|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1) | Electron microscopy | 4.3 | 2020-07-01 |
448 | 5KPV|1|27 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II) | Electron microscopy | 4.1 | 2016-09-28 |
449 | 8CGJ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Streptomycin bound to the 30S body | Electron microscopy | 1.79 | 2023-07-26 |
450 | 8C8X|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.93 | 2023-04-05 |
451 | 5GAF|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA, tRNA CCAend | Escherichia coli | Bacteria | RF02541 | RNC in complex with SRP | Electron microscopy | 4.3 | 2016-02-03 |
452 | 8CGU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Gentamicin bound to the 30S body | Electron microscopy | 1.89 | 2023-07-26 |
453 | 8RCS|1|72 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Rotated disome interface class 1) | Electron microscopy | 4.46 | 2024-03-06 |
454 | 7QGH|1|N | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of the E. coli disome - collided 70S ribosome | Electron microscopy | 4.48 | 2022-03-16 |
455 | 6GXP|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only) | Electron microscopy | 4.4 | 2018-08-15 |
456 | 6Q98|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome | Electron microscopy | 4.3 | 2019-02-27 |
457 | 3JA1|1|LA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
458 | 3JCN|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I | Electron microscopy | 4.6 | 2016-03-09 |
459 | 8CEP|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Round2 30S head (no antibiotic) | Electron microscopy | 2.04 | 2023-07-19 |
460 | 6OST|1|1 | Large subunit ribosomal RNA | 23S Ribosomal RNA | Escherichia coli | Bacteria | RF02541 | RF2 pre-accommodated state bound Release complex 70S at 24ms | Electron microscopy | 4.2 | 2019-06-19 |
461 | 8PVA|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of bacterial ribosome determined by cryoEM at 100 keV | Electron microscopy | 4.5 | 2023-11-29 |
462 | 6GC4|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 50S ribosomal subunit assembly intermediate state 3 | Electron microscopy | 4.3 | 2018-07-04 |
463 | 8CGR|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Apramycin bound to the 30S body | Electron microscopy | 2.12 | 2023-07-26 |
464 | 5LZF|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H) | Electron microscopy | 4.6 | 2016-11-23 |
465 | 6XDR|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 4.7 | 2020-09-02 |
466 | 8KIE|1|a | Large subunit ribosomal RNA | 23S rRNA (partial) | Escherichia coli | Bacteria | RF02541 | Structure of YchF with 50S ribosomal subunit (local map) | Electron microscopy | 2.5 | 2024-08-28 |
467 | 6X9Q|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 4.8 | 2020-09-02 |
468 | 5LZC|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR) | Electron microscopy | 4.8 | 2016-11-23 |
469 | 5NCO|1|A | Large subunit ribosomal RNA | 23S rRNA, P-site tRNA-CCA end | Escherichia coli | Bacteria | RF02541 | Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome | Electron microscopy | 4.8 | 2017-05-24 |
470 | 8C92|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.79 | 2023-04-05 |
471 | 6XGF|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 5 | 2020-09-02 |
472 | 6GC6|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 50S ribosomal subunit assembly intermediate state 2 | Electron microscopy | 4.3 | 2018-07-04 |
473 | 8C91|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 4.19 | 2023-04-05 |
474 | 8C94|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.8 | 2023-04-05 |
475 | 6C4H|1|A | Large subunit ribosomal RNA | 23S rRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF02541 | Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region) | Electron microscopy | 3.1 | 2018-02-21 |
476 | 6GC7|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 50S ribosomal subunit assembly intermediate state 1 | Electron microscopy | 4.3 | 2018-06-20 |
477 | 8C99|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Time limited cryo-EM reveals early ribosome assembly in action | Electron microscopy | 3.29 | 2023-04-05 |
478 | 8UPR|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 5.3 | 2024-05-29 |
479 | 8URI|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 5.3 | 2024-05-29 |
480 | 8UQM|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 5.3 | 2024-05-29 |
481 | 8RCT|1|72 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Rotated disome interface class 2) | Electron microscopy | 5.32 | 2024-03-06 |
482 | 5LZB|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB) | Electron microscopy | 5.3 | 2016-11-23 |
483 | 8C93|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 4.17 | 2023-04-05 |
484 | 8UPO|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 5.5 | 2024-05-29 |
485 | 8C98|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 3.66 | 2023-04-05 |
486 | 7QGR|1|N | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the SmrB-bound E. coli disome - collided 70S ribosome | Electron microscopy | 5.7 | 2022-06-22 |
487 | 8URH|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 5.7 | 2024-05-29 |
488 | 4CSU|1|B | Large subunit ribosomal RNA | 23S RRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structures of the 50S ribosome subunit bound with ObgE | Electron microscopy | 5.5 | 2014-06-04 |
489 | 8C97|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 4.07 | 2023-04-05 |
490 | 8R3V|1|71 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (non-rotated disome interface) | Electron microscopy | 3.28 | 2024-03-06 |
491 | 4V5H|1|BB | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. | Electron microscopy | 5.8 | 2014-07-09 |
492 | 8C96|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 4.43 | 2023-04-05 |
493 | 7PJZ|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP) | Electron microscopy | 6 | 2021-10-20 |
494 | 7PJT|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1) | Electron microscopy | 6 | 2021-10-20 |
495 | 8RCL|1|71 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Non-rotated disome interface class 1) | Electron microscopy | 3.49 | 2024-03-13 |
496 | 8RCM|1|71 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Non-rotated disome interface class 2) | Electron microscopy | 3.59 | 2024-03-06 |
497 | 5U4J|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.7 | 2017-01-11 |
498 | 3J8G|1|B | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit | Electron microscopy | 5 | 2014-11-26 |
499 | 9CL9|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | WT 12C IM fraction, B-b3 with RluB bound | Electron microscopy | 5.04 | 2024-07-24 |
500 | 7PJX|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP) | Electron microscopy | 6.5 | 2021-10-20 |
501 | 8URX|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome | Electron microscopy | 6.6 | 2024-05-29 |
502 | 8C95|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 4.92 | 2023-04-05 |
503 | 4V69|1|BB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Ternary complex-bound E.coli 70S ribosome. | Electron microscopy | 6.7 | 2014-07-09 |
504 | 5AKA|1|B | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | EM structure of ribosome-SRP-FtsY complex in closed state | Electron microscopy | 5.7 | 2015-03-25 |
505 | 6VZ7|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 7 | 2020-09-02 |
506 | 6VYU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer | Electron microscopy | 7 | 2020-09-02 |
507 | 6XII|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 7 | 2020-09-02 |
508 | 6VYW|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 7 | 2020-09-02 |
509 | 8RCS|1|71 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Rotated disome interface class 1) | Electron microscopy | 4.46 | 2024-03-06 |
510 | 4V6M|1|B8 | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | Structure of the ribosome-SecYE complex in the membrane environment | Electron microscopy | 7.1 | 2014-07-09 |
511 | 4V7B|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Visualization of two tRNAs trapped in transit during EF-G-mediated translocation | Electron microscopy | 6.8 | 2014-07-09 |
512 | 5ADY|1|B | Large subunit ribosomal RNA | 23S RRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM structures of the 50S ribosome subunit bound with HflX | Electron microscopy | 4.5 | 2015-10-14 |
513 | 8C9A|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cryo-EM captures early ribosome assembly in action | Electron microscopy | 4.86 | 2023-04-05 |
514 | 3J5L|1|A | Large subunit ribosomal RNA | 23S ribsomal RNA, 5'-R(*CP*(MA6))-3', 5'-R(*CP*CP*A)-3' | Escherichia coli | Bacteria | RF02541 | Structure of the E. coli 50S subunit with ErmBL nascent chain | Electron microscopy | 6.6 | 2014-03-26 |
515 | 4V7C|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | Electron microscopy | 7.6 | 2014-07-09 |
516 | 4V7D|1|AA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | Electron microscopy | 7.6 | 2014-07-09 |
517 | 8RCT|1|71 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli paused disome complex (Rotated disome interface class 2) | Electron microscopy | 5.32 | 2024-03-06 |
518 | 6H58|1|AA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome | Electron microscopy | 7.9 | 2018-09-05 |
519 | 6H58|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome | Electron microscopy | 7.9 | 2018-09-05 |
520 | 6XIJ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 8 | 2020-09-02 |
521 | 5ZZM|1|N | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S subunit bound HflX protein in presence of ATP (AMP-PNP) and GTP (GMP-PNP) analogs. | Electron microscopy | 8.1 | 2018-06-27 |
522 | 4V6K|1|AB | Large subunit ribosomal RNA | ribosomal RNA 23S | Escherichia coli | Bacteria | RF02541 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 8.25 | 2014-07-09 |
523 | 8C9B|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Time limited cryo-EM reveals early ribosome assembly in action | Electron microscopy | 5.9 | 2023-04-05 |
524 | 6VZ3|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer | Electron microscopy | 8.9 | 2020-09-02 |
525 | 6VZ5|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 8.9 | 2020-09-02 |
526 | 4V7A|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4) | Electron microscopy | 9 | 2014-07-09 |
527 | 4V65|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the E. coli ribosome in the Pre-accommodation state | Electron microscopy | 9 | 2014-07-09 |
528 | 4V66|1|BB | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | Electron microscopy | 9 | 2014-07-09 |
529 | 8C9C|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Time limited cryo-EM reveals early ribosome assembly in action | Electron microscopy | 6.62 | 2023-04-05 |
530 | 4V6T|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | Electron microscopy | 8.3 | 2014-07-09 |
531 | 7PJU|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2) | Electron microscopy | 9.5 | 2021-11-17 |
532 | 2J28|1|B | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | MODEL OF E. COLI SRP BOUND TO 70S RNCS | Electron microscopy | 9.5 | 2006-11-08 |
533 | 2RDO|1|B | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF02541 | 50S subunit with EF-G(GDPNP) and RRF bound | Electron microscopy | 9.1 | 2008-03-04 |
534 | 4V6V|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Tetracycline resistance protein Tet(O) bound to the ribosome | Electron microscopy | 9.8 | 2014-07-09 |
535 | 6VYY|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 9.9 | 2020-09-02 |
536 | 6VYX|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 9.9 | 2020-09-02 |
537 | 6VYZ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site | Electron microscopy | 9.9 | 2020-09-02 |
538 | 6VZ2|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 10 | 2020-09-02 |
539 | 3DG2|1|B | Large subunit ribosomal RNA | 23S Ribosomal RNA from E. coli | Escherichia coli | Bacteria | RF02541 | Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complex | Electron microscopy | 10 | 2009-02-03 |
540 | 3DG0|1|B | Large subunit ribosomal RNA | 23S Ribosomal RNA from E. coli | Escherichia coli | Bacteria | RF02541 | Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complex | Electron microscopy | 10.8 | 2009-02-03 |
541 | 4V6R|1|BB | Large subunit ribosomal RNA | 23S ribomosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) | Electron microscopy | 11.5 | 2014-07-09 |
542 | 4V6Q|1|BB | Large subunit ribosomal RNA | 23S ribomosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) | Electron microscopy | 11.5 | 2014-07-09 |
543 | 4V7I|1|A8 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Ribosome-SecY complex. | Electron microscopy | 9.6 | 2014-07-09 |
544 | 4V48|1|A0 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome | Electron microscopy | 11.5 | 2014-07-09 |
545 | 4V75|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | Electron microscopy | 12 | 2014-07-09 |
546 | 4V6Z|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | Electron microscopy | 12 | 2014-07-09 |
547 | 4V6Y|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | Electron microscopy | 12 | 2014-07-09 |
548 | 3BBX|1|B | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | Electron microscopy | 10 | 2008-10-21 |
549 | 4V6N|1|AB | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) | Electron microscopy | 12.1 | 2014-07-09 |
550 | 4V47|1|A0 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome | Electron microscopy | 12.3 | 2014-07-09 |
551 | 4V72|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | Electron microscopy | 13 | 2014-07-09 |
552 | 4V6S|1|AB | Large subunit ribosomal RNA | 23S ribomosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes) | Electron microscopy | 13.1 | 2014-07-09 |
553 | 4V6L|1|BB | Large subunit ribosomal RNA | 50S ribosomal RNA 23S | Escherichia coli | Bacteria | RF02541 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 13.2 | 2014-07-09 |
554 | 3DG4|1|B | Large subunit ribosomal RNA | 23S RibosomaL RNA from E. coli | Escherichia coli | Bacteria | RF02541 | Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complex | Electron microscopy | 12.8 | 2009-02-03 |
555 | 4V6P|1|BB | Large subunit ribosomal RNA | 23S ribomosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) | Electron microscopy | 13.5 | 2014-07-09 |
556 | 6VYT|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 14 | 2020-09-02 |
557 | 4V6O|1|BB | Large subunit ribosomal RNA | 23S ribomosomal RNA | Escherichia coli | Bacteria | RF02541 | Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes) | Electron microscopy | 14.7 | 2014-07-09 |
558 | 4V73|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | Electron microscopy | 15 | 2014-07-09 |
559 | 4V79|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | Electron microscopy | 15 | 2014-07-09 |
560 | 3DG5|1|B | Large subunit ribosomal RNA | 23S Ribosomal RNA from E. coli | Escherichia coli | Bacteria | RF02541 | Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complex | Electron microscopy | 15.5 | 2009-02-03 |
561 | 4V4W|1|B0 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | Electron microscopy | 15 | 2014-07-09 |
562 | 4V4V|1|B0 | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | Electron microscopy | 15 | 2014-07-09 |
563 | 4V76|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | Electron microscopy | 17 | 2014-07-09 |
564 | 4V70|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | Electron microscopy | 17 | 2014-07-09 |
565 | 4V74|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | Electron microscopy | 17 | 2014-07-09 |
566 | 4V77|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | Electron microscopy | 17 | 2014-07-09 |
567 | 4V78|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | Electron microscopy | 20 | 2014-07-09 |
568 | 4V71|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | Electron microscopy | 20 | 2014-07-09 |