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Equivalence class NR_20.0_88517.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14JNG|1|L (rep)RNA (42-MER)Schmallenberg virus nucleoprotein-RNA complexX-ray diffraction2.122013-07-31
25UK4|1|xRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
35UK4|1|vRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
45UK4|1|wRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
55UK4|1|uRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
64BHH|1|RPOLY-URIDINE 45-MERsynthetic constructCrystal structure of tetramer of La Crosse virus nucleoprotein in complex with ssRNAX-ray diffraction3.42013-04-24
74J1G|1|ERNA (45-MER)Leanyer orthobunyavirus nucleoprotein-ssRNA complexX-ray diffraction2.792013-04-10
83ZLA|1|IRNAEscherichia coliCrystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-ray diffraction3.22013-05-01
93ZLA|1|JRNAEscherichia coliCrystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-ray diffraction3.22013-05-01
103PU4|1|RRNA (45-MER)synthetic constructCrystal Structure of a vesicular stomatitis virus nucleocapsid-polyU complexX-ray diffraction32011-01-12
112GIC|1|R45-MERCrystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complexX-ray diffraction2.922006-08-22
123HHZ|1|RRNA (45-MER)Escherichia coliComplex of the vesicular stomatitis virus nucleocapsid and the nucleocapsid-binding domain of the phosphoproteinX-ray diffraction3.52009-07-28
136BJY|1|RRNA (45-MER)Indiana vesiculovirusVSV Nucleocapsid with Polyamide BoundX-ray diffraction3.462018-02-28
145UKB|1|RRNA (45-MER)Escherichia coliVSV N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1004X-ray diffraction5.472017-04-19
156H25|1|RU44 ssRNAsynthetic constructHuman nuclear RNA exosome EXO-10-MPP6 complexElectron microscopy3.82018-08-15
162WYY|1|SPOLY-URIDINEIndiana vesiculovirusCRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUSElectron microscopy10.62010-02-16
172WYY|1|RPOLY-URIDINEIndiana vesiculovirusCRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUSElectron microscopy10.62010-02-16

Release history

Release3.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_88517.4NR_20.0_88517.33.35(16) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4J1G|1|E, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R(1) 6H25|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_88517.4NR_20.0_10203.13.99(4) 2GIC|1|R, 3HHZ|1|R, 5UKB|1|R, 6BJY|1|R(13) 2WYY|1|R, 2WYY|1|S, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4J1G|1|E, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_28720.13.99(1) 4J1G|1|E(16) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_38259.13.99(5) 3PU4|1|R, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x(12) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4J1G|1|E, 4JNG|1|L, 5UKB|1|R, 6BJY|1|R, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_50982.13.99(2) 2WYY|1|R, 2WYY|1|S(15) 2GIC|1|R, 3HHZ|1|R, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4J1G|1|E, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_58017.13.99(1) 4JNG|1|L(16) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4J1G|1|E, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_77057.13.99(1) 4BHH|1|R(16) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4J1G|1|E, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_79533.13.99(2) 3ZLA|1|I, 3ZLA|1|J(15) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3PU4|1|R, 4BHH|1|R, 4J1G|1|E, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R, 6H25|1|R(0)
NR_20.0_88517.4NR_20.0_84781.13.99(1) 6H25|1|R(16) 2GIC|1|R, 2WYY|1|R, 2WYY|1|S, 3HHZ|1|R, 3PU4|1|R, 3ZLA|1|I, 3ZLA|1|J, 4BHH|1|R, 4J1G|1|E, 4JNG|1|L, 5UK4|1|u, 5UK4|1|v, 5UK4|1|w, 5UK4|1|x, 5UKB|1|R, 6BJY|1|R(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14BHH|1|RCrystal structure of tetramer of La Crosse virus nucleoprotein in complex with ssRNAX-RAY DIFFRACTION3.444
24JNG|1|LSchmallenberg virus nucleoprotein-RNA complexX-RAY DIFFRACTION2.1242
33ZLA|1|JCrystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-RAY DIFFRACTION3.244
43ZLA|1|ICrystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-RAY DIFFRACTION3.244
54J1G|1|ELeanyer orthobunyavirus nucleoprotein-ssRNA complexX-RAY DIFFRACTION2.7945
66H25|1|RHuman nuclear RNA exosome EXO-10-MPP6 complexELECTRON MICROSCOPY3.86
73PU4|1|RCrystal Structure of a vesicular stomatitis virus nucleocapsid-polyU complexX-RAY DIFFRACTION345
85UK4|1|xVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
95UK4|1|wVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
105UK4|1|vVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
115UK4|1|uVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
123HHZ|1|RComplex of the vesicular stomatitis virus nucleocapsid and the nucleocapsid-binding domain of the phosphoproteinX-RAY DIFFRACTION3.545
132GIC|1|RCrystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complexX-RAY DIFFRACTION2.9245
145UKB|1|RVSV N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1004X-RAY DIFFRACTION5.4745
156BJY|1|RVSV Nucleocapsid with Polyamide BoundX-RAY DIFFRACTION3.4645
162WYY|1|RCRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUSELECTRON MICROSCOPY10.645
172WYY|1|SCRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUSELECTRON MICROSCOPY10.645

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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