NR_20.0_90633.22

Members (40)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4WF9\|1\|X (rep)	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin	X-ray diffraction	3.43	2015-10-21
2	5HL7\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin	X-ray diffraction	3.55	2016-12-21
3	4WFA\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid	X-ray diffraction	3.39	2015-10-21
4	5HKV\|1\|X	Large subunit ribosomal RNA	23s ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin	X-ray diffraction	3.66	2017-05-03
5	4WCE\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus	X-ray diffraction	3.53	2015-10-21
6	4WFB\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205	X-ray diffraction	3.43	2015-10-21
7	5NRG\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02	X-ray diffraction	3.44	2017-08-09
8	8P2G\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state	Electron microscopy	2.02	2024-05-01
9	6S0Z\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.	Electron microscopy	2.3	2019-08-21
10	8P2F\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	Electron microscopy	2.44	2024-05-01
11	8P2H\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state	Electron microscopy	2.49	2024-05-01
12	7ASM\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 50S after 30 minutes incubation at 37C	Electron microscopy	2.48	2021-11-17
13	6HMA\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit	Electron microscopy	2.65	2018-11-14
14	6S0X\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.	Electron microscopy	2.42	2019-08-21
15	5NGM\|1\|AA	Large subunit ribosomal RNA	23S Ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	2.9S structure of the 70S ribosome composing the S. aureus 100S complex	Electron microscopy	2.9	2017-10-04
16	7NHL\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus	Electron microscopy	3.1	2021-05-05
17	7ASP\|1\|Y	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 70S after 50 minutes incubation at 37C	Electron microscopy	2.86	2021-11-17
18	7NHM\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	70S ribosome from Staphylococcus aureus	Electron microscopy	3.1	2021-05-05
19	7P48\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus ribosome in complex with Sal(B)	Electron microscopy	2.9	2022-02-02
20	7ASN\|1\|A	Large subunit ribosomal RNA	23S	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 50S after 30 minutes incubation a 37C	Electron microscopy	2.73	2021-11-17
21	6YEF\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	70S initiation complex with assigned rRNA modifications from Staphylococcus aureus	Electron microscopy	3.2	2021-01-27
22	7TTW\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance	Electron microscopy	2.9	2022-07-06
23	6WQN\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid	Electron microscopy	2.9	2020-06-03
24	7ASO\|1\|Y	Large subunit ribosomal RNA	23S	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 70S after 30 minutes incubation at 37C	Electron microscopy	3.11	2021-11-17
25	7TTU\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)	Electron microscopy	3	2022-07-06
26	6WQQ\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid	Electron microscopy	3.1	2020-06-03
27	6WRU\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid	Electron microscopy	3.1	2020-06-03
28	6WRS\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid	Electron microscopy	3.2	2020-06-03
29	6DDG\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6	Electron microscopy	3.1	2019-03-20
30	6DDD\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5	Electron microscopy	3.1	2019-03-20
31	6S12\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).	Electron microscopy	3.2	2019-08-21
32	6SJ6\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus	Electron microscopy	3.23	2020-04-08
33	5T7V\|1\|B	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)	Electron microscopy	3.6	2017-05-31
34	5ND8\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Hibernating ribosome from Staphylococcus aureus (Unrotated state)	Electron microscopy	3.7	2017-06-28
35	5ND9\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Hibernating ribosome from Staphylococcus aureus (Rotated state)	Electron microscopy	3.7	2017-06-28
36	5LI0\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	70S ribosome from Staphylococcus aureus	Electron microscopy	3.8	2016-12-28
37	5TCU\|1\|B	Large subunit ribosomal RNA	23S RRNA	Staphylococcus aureus	Bacteria	RF02541	Methicillin sensitive Staphylococcus aureus 70S ribosome	Electron microscopy	3.9	2017-05-24
38	6S13\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).	Electron microscopy	3.58	2019-08-21
39	6FXC\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	Electron microscopy	6.76	2018-03-21
40	6FXC\|1\|AA	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	Electron microscopy	6.76	2018-03-21

Release history

Release	3.333	3.334	3.335	3.336	3.337	3.338	3.339	3.340	3.341	3.342	3.343	3.344
Date	2024-05-01	2024-05-08	2024-05-15	2024-05-22	2024-05-29	2024-06-05	2024-06-12	2024-06-19	2024-06-26	2024-07-03	2024-07-10	2024-07-17

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	7ASN\|1\|A	Staphylococcus aureus 50S after 30 minutes incubation a 37C	ELECTRON MICROSCOPY	2.73	2739
2	6SJ6\|1\|A	Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus	ELECTRON MICROSCOPY	3.23	2585
3	6HMA\|1\|A	Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit	ELECTRON MICROSCOPY	2.65	2831
4	7ASM\|1\|A	Staphylococcus aureus 50S after 30 minutes incubation at 37C	ELECTRON MICROSCOPY	2.48	2831
5	6FXC\|1\|BA	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	ELECTRON MICROSCOPY	6.76	2905
6	6FXC\|1\|AA	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	ELECTRON MICROSCOPY	6.76	2905
7	5NGM\|1\|AA	2.9S structure of the 70S ribosome composing the S. aureus 100S complex	ELECTRON MICROSCOPY	2.9	2905
8	4WFB\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205	X-RAY DIFFRACTION	3.43	2707
9	4WF9\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin	X-RAY DIFFRACTION	3.43	2712
10	4WFA\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid	X-RAY DIFFRACTION	3.39	2711
11	4WCE\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus	X-RAY DIFFRACTION	3.53	2708
12	5HL7\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin	X-RAY DIFFRACTION	3.55	2705
13	5HKV\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin	X-RAY DIFFRACTION	3.66	2695
14	5NRG\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02	X-RAY DIFFRACTION	3.44	2711
15	6DDG\|1\|1	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6	ELECTRON MICROSCOPY	3.1	2646
16	6DDD\|1\|1	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5	ELECTRON MICROSCOPY	3.1	2646
17	5ND9\|1\|A	Hibernating ribosome from Staphylococcus aureus (Rotated state)	ELECTRON MICROSCOPY	3.7	2914
18	5ND8\|1\|A	Hibernating ribosome from Staphylococcus aureus (Unrotated state)	ELECTRON MICROSCOPY	3.7	2912
19	5LI0\|1\|A	70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.8	2914
20	7NHM\|1\|A	70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.1	2824
21	7NHL\|1\|A	VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.1	2914
22	8P2F\|1\|A	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	ELECTRON MICROSCOPY	2.44	2837
23	8P2H\|1\|A	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state	ELECTRON MICROSCOPY	2.49	2839
24	8P2G\|1\|A	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state	ELECTRON MICROSCOPY	2.02	2839
25	7P48\|1\|A	Staphylococcus aureus ribosome in complex with Sal(B)	ELECTRON MICROSCOPY	2.9	2661
26	6YEF\|1\|A	70S initiation complex with assigned rRNA modifications from Staphylococcus aureus	ELECTRON MICROSCOPY	3.2	2875
27	5TCU\|1\|B	Methicillin sensitive Staphylococcus aureus 70S ribosome	ELECTRON MICROSCOPY	3.9	2755
28	5T7V\|1\|B	Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)	ELECTRON MICROSCOPY	3.6	2768
29	6WRU\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid	ELECTRON MICROSCOPY	3.1	2665
30	6WQQ\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid	ELECTRON MICROSCOPY	3.1	2698
31	6WRS\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid	ELECTRON MICROSCOPY	3.2	2698
32	7TTU\|1\|1	50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)	ELECTRON MICROSCOPY	3	2684
33	7TTW\|1\|1	50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance	ELECTRON MICROSCOPY	2.9	2690
34	6WQN\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid	ELECTRON MICROSCOPY	2.9	2687
35	7ASO\|1\|Y	Staphylococcus aureus 70S after 30 minutes incubation at 37C	ELECTRON MICROSCOPY	3.11	2720
36	6S0X\|1\|A	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.	ELECTRON MICROSCOPY	2.42	2905
37	6S0Z\|1\|A	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.	ELECTRON MICROSCOPY	2.3	2905
38	6S12\|1\|A	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).	ELECTRON MICROSCOPY	3.2	2905
39	6S13\|1\|A	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).	ELECTRON MICROSCOPY	3.58	2905
40	7ASP\|1\|Y	Staphylococcus aureus 70S after 50 minutes incubation at 37C	ELECTRON MICROSCOPY	2.86	2723

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_90633.22 Obsolete

Release history

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