Equivalence class NR_20.0_90759.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QDV|1|2+ 6QDV|1|6 (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Intron lariat: MINX RNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 2 | 6ICZ|1|H+ 6ICZ|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2snRNA, U6snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 3 | 6ID1|1|H+ 6ID1|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2snRNA, U6snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | Electron microscopy | 2.86 | 2019-03-13 |
| 4 | 5XJC|1|H+ 5XJC|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Homo sapiens small nuclear RNA (U2) gene, pre-mRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 5 | 5YZG|1|H+ 5YZG|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | Electron microscopy | 4.1 | 2018-08-08 |
| 6 | 5Z58|1|H+ 5Z58|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | Electron microscopy | 4.9 | 2018-09-19 |
| 7 | 5MQF|1|2+ 5MQF|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, Human gene for small nuclear RNA U2 (snRNA U2), MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 8 | 5Z56|1|H+ 5Z56|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | Electron microscopy | 5.1 | 2018-09-19 |
| 9 | 5Z57|1|H+ 5Z57|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | Electron microscopy | 6.5 | 2018-09-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_90759.3 | NR_20.0_90759.2 | 3.65 | (7) 5MQF|1|2+5MQF|1|6, 5XJC|1|H+5XJC|1|F, 5YZG|1|H+5YZG|1|F, 5Z56|1|H+5Z56|1|F, 5Z57|1|H+5Z57|1|F, 5Z58|1|H+5Z58|1|F, 6QDV|1|2+6QDV|1|6 | (2) 6ICZ|1|H+6ICZ|1|F, 6ID1|1|H+6ID1|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_90759.3 | NR_20.0_90759.4 | 3.70 | (9) 5MQF|1|2+5MQF|1|6, 5XJC|1|H+5XJC|1|F, 5YZG|1|H+5YZG|1|F, 5Z56|1|H+5Z56|1|F, 5Z57|1|H+5Z57|1|F, 5Z58|1|H+5Z58|1|F, 6ICZ|1|H+6ICZ|1|F, 6ID1|1|H+6ID1|1|F, 6QDV|1|2+6QDV|1|6 | (0) | (1) 6QX9|1|2 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5MQF|1|2+ 5MQF|1|6 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 140 | |
| 2 | 6QDV|1|2+ 6QDV|1|6 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 120 | |
| 3 | 6ICZ|1|H+ 6ICZ|1|F | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 140 | |
| 4 | 5XJC|1|H+ 5XJC|1|F | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 140 | |
| 5 | 6ID1|1|H+ 6ID1|1|F | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 136 | |
| 6 | 5YZG|1|H+ 5YZG|1|F | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 139 | |
| 7 | 5Z57|1|H+ 5Z57|1|F | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 136 | |
| 8 | 5Z56|1|H+ 5Z56|1|F | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 136 | |
| 9 | 5Z58|1|H+ 5Z58|1|F | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 136 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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