#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15UH8|1|I (rep)RNA (5'-R(*UP*CP*GP*A)-3')Mycobacterium tuberculosisCrystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNAX-ray diffraction4.182017-04-12
25VI5|1|QRNA (5'-R(*UP*CP*GP*A)-3')synthetic constructStructure of Mycobacterium smegmatis transcription initiation complex with a full transcription bubbleX-ray diffraction3.22017-07-26
34XLN|1|TRNA (5'-D(P*UP*CP*GP*A)-3')synthetic constructCrystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNAX-ray diffraction42015-09-23
44XLR|1|TRNA (5'-R(P*UP*CP*GP*A)-3')synthetic constructCrystal structure of T.aquaticus transcription initiation complex with CarD containing bubble promoter and RNAX-ray diffraction4.32015-09-23
54XLN|1|QRNA (5'-D(P*UP*CP*GP*A)-3')synthetic constructCrystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNAX-ray diffraction42015-09-23
65I2D|1|KRNA (5'-R(*UP*CP*GP*A)-3')Thermus thermophilusCrystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPoX-ray diffraction4.412016-06-22
75I2D|1|VRNA (5'-R(*UP*CP*GP*A)-3')Thermus thermophilusCrystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPoX-ray diffraction4.412016-06-22
84XLR|1|QRNA (5'-R(P*UP*CP*GP*A)-3')synthetic constructCrystal structure of T.aquaticus transcription initiation complex with CarD containing bubble promoter and RNAX-ray diffraction4.32015-09-23

Release history

Release2.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.116
Date2017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_90795.4NR_20.0_90795.32.139(7) 4XLN|1|Q, 4XLN|1|T, 4XLR|1|Q, 4XLR|1|T, 5I2D|1|K, 5I2D|1|V, 5UH8|1|I(1) 5VI5|1|Q(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_90795.4NR_20.0_90795.53.117(8) 4XLN|1|Q, 4XLN|1|T, 4XLR|1|Q, 4XLR|1|T, 5I2D|1|K, 5I2D|1|V, 5UH8|1|I, 5VI5|1|Q(0) (1) 6KQE|1|I

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15I2D|1|KCrystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPoX-RAY DIFFRACTION4.414
25I2D|1|VCrystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPoX-RAY DIFFRACTION4.414
34XLR|1|TCrystal structure of T.aquaticus transcription initiation complex with CarD containing bubble promoter and RNAX-RAY DIFFRACTION4.34
44XLN|1|TCrystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNAX-RAY DIFFRACTION44
54XLN|1|QCrystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNAX-RAY DIFFRACTION44
65UH8|1|ICrystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNAX-RAY DIFFRACTION4.184
75VI5|1|QStructure of Mycobacterium smegmatis transcription initiation complex with a full transcription bubbleX-RAY DIFFRACTION3.24
84XLR|1|QCrystal structure of T.aquaticus transcription initiation complex with CarD containing bubble promoter and RNAX-RAY DIFFRACTION4.34

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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