#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18S1P|1|a (rep)Transfer RNAP-tRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00005YlmH bound to PtRNA-50SElectron microscopy1.962024-06-12
27AQC|1|TTransfer RNAAla-tRNA (P-site)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00005Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
37AQD|1|TTransfer RNAAla-tRNA (A/P-site)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00005Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.12020-11-25
47AQC|1|PTransfer RNAAla-tRNA (P-site)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00005Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
57AS8|1|2Transfer RNAtRNA-Ala-1-1Bacillus subtilis subsp. subtilis str. 168BacteriaRF00005Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy2.92020-12-09
67AS9|1|2Transfer RNAtRNA-Ala-1-1Bacillus subtilis subsp. subtilis str. 168BacteriaRF00005Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.Electron microscopy3.52020-12-23
77OPE|1|2Transfer RNAtRNA-Ala-UGCBacillus subtilis subsp. subtilis str. 168BacteriaRF00005RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)Electron microscopy3.22021-07-21
88S1U|1|aTransfer RNAP-tRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00005YlmH bound to stalled 50S subunits with RqcH and PtRNAElectron microscopy3.42024-06-12
98S1U|1|cTransfer RNAP-tRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00005YlmH bound to stalled 50S subunits with RqcH and PtRNAElectron microscopy3.42024-06-12
107ASA|1|2Transfer RNAtRNA-Ala-1-1Bacillus subtilis subsp. subtilis str. 168BacteriaRF00005Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy3.52020-12-23

Release history

Release3.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.362
Date2024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17AQC|1|TStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.9976
28S1U|1|cYlmH bound to stalled 50S subunits with RqcH and PtRNAELECTRON MICROSCOPY3.466
37AQD|1|TStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.176
47AQC|1|PStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.9969
57OPE|1|2RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)ELECTRON MICROSCOPY3.270
67AS9|1|2Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.575
78S1U|1|aYlmH bound to stalled 50S subunits with RqcH and PtRNAELECTRON MICROSCOPY3.469
88S1P|1|aYlmH bound to PtRNA-50SELECTRON MICROSCOPY1.9669
97AS8|1|2Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.973
107ASA|1|2Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY3.534

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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