NR_20.0_94066.9

Members (18)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	8BUU\|1\|a (rep)	Small subunit ribosomal RNA	16S rRNA, mRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	ARE-ABCF VmlR2 bound to a 70S ribosome	Electron microscopy	2.9	2023-04-05
2	6HA1\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Bacillus subtilis	Bacteria	RF00177	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin	Electron microscopy	3.1	2018-08-29
3	7O5B\|1\|A	Small subunit ribosomal RNA	16S rRNA (1533-MER)	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound	Electron microscopy	3.33	2022-02-02
4	8QPP\|1\|A	Small subunit ribosomal RNA	16S rRNA (1533-MER)	Bacillus subtilis	Bacteria	RF00177	Bacillus subtilis MutS2-collided disome complex (stalled 70S)	Electron microscopy	3.4	2023-12-27
5	7QV2\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Bacillus subtilis collided disome (Collided 70S)	Electron microscopy	3.5	2022-03-09
6	6HA8\|1\|a	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis	Bacteria	RF00177	Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome	Electron microscopy	3.5	2018-08-29
7	7QV1\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Bacillus subtilis collided disome (Leading 70S)	Electron microscopy	3.5	2022-03-09
8	8R55\|1\|A	Small subunit ribosomal RNA	16S rRNA (1533-MER)	Bacillus subtilis	Bacteria	RF00177	Bacillus subtilis MutS2-collided disome complex (stalled 70S)	Electron microscopy	3.57	2024-01-17
9	8CDU\|1\|A	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Rnase R bound to a 30S degradation intermediate (main state)	Electron microscopy	3.1	2023-12-20
10	5NJT\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Bacillus subtilis	Bacteria	RF00177	Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.	Electron microscopy	3.8	2017-06-14
11	3J9W\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Bacillus subtilis	Bacteria	RF00177	Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex	Electron microscopy	3.9	2015-04-29
12	8CEC\|1\|A	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Rnase R bound to a 30S degradation intermediate (State I - head-turning)	Electron microscopy	3.57	2023-12-20
13	8CEE\|1\|A	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Rnase R bound to a 30S degradation intermediate (State I - head-turning)	Electron microscopy	3.7	2023-12-20
14	6HTQ\|1\|a	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis	Bacteria	RF00177	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome	Electron microscopy	4.5	2019-10-23
15	7QGU\|1\|W	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis	Bacteria	RF00177	Structure of the B. subtilis disome - stalled 70S ribosome	Electron microscopy	4.75	2022-03-16
16	8CED\|1\|A	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Rnase R bound to a 30S degradation intermediate (State I - head-turning)	Electron microscopy	4.15	2023-12-20
17	7QV3\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF00177	Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)	Electron microscopy	5.14	2022-03-09
18	7QH4\|1\|W	Small subunit ribosomal RNA	16S rRNA	Bacillus subtilis	Bacteria	RF00177	Structure of the B. subtilis disome - collided 70S ribosome	Electron microscopy	5.45	2022-03-16

Release history

Release	3.318	3.319	3.320	3.321	3.322	3.323	3.324	3.325	3.326
Date	2024-01-17	2024-01-24	2024-01-31	2024-02-07	2024-02-14	2024-02-21	2024-02-28	2024-03-06	2024-03-13

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	Length
1		8BUU\|1\|a	ARE-ABCF VmlR2 bound to a 70S ribosome	ELECTRON MICROSCOPY	2.9	1538
2		8R55\|1\|A	Bacillus subtilis MutS2-collided disome complex (stalled 70S)	ELECTRON MICROSCOPY	3.57	1533
3		8QPP\|1\|A	Bacillus subtilis MutS2-collided disome complex (stalled 70S)	ELECTRON MICROSCOPY	3.4	1533
4		7O5B\|1\|A	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound	ELECTRON MICROSCOPY	3.33	1533
5		7QV3\|1\|a	Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)	ELECTRON MICROSCOPY	5.14	1533
6		7QV1\|1\|a	Bacillus subtilis collided disome (Leading 70S)	ELECTRON MICROSCOPY	3.5	1533
7		7QV2\|1\|a	Bacillus subtilis collided disome (Collided 70S)	ELECTRON MICROSCOPY	3.5	1545
8		6HA8\|1\|a	Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome	ELECTRON MICROSCOPY	3.5	1533
9		6HA1\|1\|a	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin	ELECTRON MICROSCOPY	3.1	1533
10		6HTQ\|1\|a	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome	ELECTRON MICROSCOPY	4.5	1533
11		7QGU\|1\|W	Structure of the B. subtilis disome - stalled 70S ribosome	ELECTRON MICROSCOPY	4.75	1544
12		3J9W\|1\|AA	Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex	ELECTRON MICROSCOPY	3.9	1544
13		7QH4\|1\|W	Structure of the B. subtilis disome - collided 70S ribosome	ELECTRON MICROSCOPY	5.45	1544
14		5NJT\|1\|A	Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.	ELECTRON MICROSCOPY	3.8	1544
15		8CED\|1\|A	Rnase R bound to a 30S degradation intermediate (State I - head-turning)	ELECTRON MICROSCOPY	4.15	1333
16		8CEC\|1\|A	Rnase R bound to a 30S degradation intermediate (State I - head-turning)	ELECTRON MICROSCOPY	3.57	1333
17		8CDU\|1\|A	Rnase R bound to a 30S degradation intermediate (main state)	ELECTRON MICROSCOPY	3.1	1333
18		8CEE\|1\|A	Rnase R bound to a 30S degradation intermediate (State I - head-turning)	ELECTRON MICROSCOPY	3.7	1333

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

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