Equivalence class NR_20.0_94952.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6WBR|1|B (rep) | RNA (94-MER) | Acidothermus cellulolyticus 11B | Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM | X-ray diffraction | 2.91 | 2020-11-18 | |||
| 2 | 6WC0|1|B | sgRNA (95-MER) | Acidothermus cellulolyticus 11B | Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM | X-ray diffraction | 3.61 | 2020-11-18 | |||
| 3 | 8D2L|1|B | Single guide RNA (106-MER) | Acidothermus cellulolyticus 11B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1) | Electron microscopy | 2.21 | 2023-12-20 | |||
| 4 | 8D2K|1|B | Single Guide RNA (102-MER) | Acidothermus cellulolyticus | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 2) | Electron microscopy | 2.43 | 2023-12-20 | |||
| 5 | 8D2P|1|B | Single guide RNA (102-MER) | Acidothermus cellulolyticus 11B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Target bound) | Electron microscopy | 2.78 | 2023-12-20 | |||
| 6 | 8D2O|1|B | Single guide RNA (106-MER) | Acidothermus cellulolyticus 11B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 2) | Electron microscopy | 2.66 | 2023-12-20 | |||
| 7 | 8D2Q|1|B | Single Guide RNA (86-MER) | Acidothermus cellulolyticus 11B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 1) | Electron microscopy | 2.58 | 2023-12-20 | |||
| 8 | 8D2N|1|B | Single guide RNA (106-MER) | Acidothermus cellulolyticus 11B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage) | Electron microscopy | 2.88 | 2023-12-20 |
Release history
| Release | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8D2P|1|B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Target bound) | ELECTRON MICROSCOPY | 2.78 | 101 | |
| 2 | 8D2L|1|B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1) | ELECTRON MICROSCOPY | 2.21 | 96 | |
| 3 | 8D2K|1|B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 2) | ELECTRON MICROSCOPY | 2.43 | 101 | |
| 4 | 8D2N|1|B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage) | ELECTRON MICROSCOPY | 2.88 | 92 | |
| 5 | 8D2Q|1|B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 1) | ELECTRON MICROSCOPY | 2.58 | 86 | |
| 6 | 8D2O|1|B | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 2) | ELECTRON MICROSCOPY | 2.66 | 87 | |
| 7 | 6WBR|1|B | Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM | X-RAY DIFFRACTION | 2.91 | 90 | |
| 8 | 6WC0|1|B | Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM | X-RAY DIFFRACTION | 3.61 | 90 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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