Equivalence class NR_20.0_99632.9 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6FYY|1|1 (rep) | Transfer RNA | mRNA (31-MER), tRNAi | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | Electron microscopy | 3.02 | 2018-12-05 |
| 2 | 8CAS|1|1 | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae W303 | Eukarya | RF00005 | Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) | Electron microscopy | 3.3 | 2023-05-24 |
| 3 | 6FYX|1|1 | Transfer RNA | mRNA (31-MER), tRNAi | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | Electron microscopy | 3.5 | 2018-12-05 |
| 4 | 3J81|1|1 | Met-tRNAi, mRNA | CryoEM structure of a partial yeast 48S preinitiation complex | Electron microscopy | 4 | 2014-11-05 | ||||
| 5 | 6GSM|1|1 | Transfer RNA | Met-tRNAi, mRNA (5'-R(P*AP*AP*U)-3') | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in open conformation | Electron microscopy | 5.15 | 2019-07-31 |
| 6 | 6GSN|1|1 | Transfer RNA | mRNA, tRNAi (75-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in closed conformation | Electron microscopy | 5.75 | 2019-06-26 |
| 7 | 6ZU9|1|1 | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a yeast ABCE1-bound 48S initiation complex | Electron microscopy | 6.2 | 2020-10-28 |
Release history
| Release | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6GSM|1|1 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 5.15 | 64 | |
| 2 | 8CAS|1|1 | Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) | ELECTRON MICROSCOPY | 3.3 | 64 | |
| 3 | 6FYX|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 64 | |
| 4 | 6ZU9|1|1 | Structure of a yeast ABCE1-bound 48S initiation complex | ELECTRON MICROSCOPY | 6.2 | 64 | |
| 5 | 6FYY|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 64 | |
| 6 | 6GSN|1|1 | Structure of a partial yeast 48S preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 5.75 | 75 | |
| 7 | 3J81|1|1 | CryoEM structure of a partial yeast 48S preinitiation complex | ELECTRON MICROSCOPY | 4 | 74 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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