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Equivalence class NR_3.0_03510.45 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A6 (rep)Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
25TBW|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A2Small subunit ribosomal RNA18S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
45TBW|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
57OSA|1|18SSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
67OSM|1|18SSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
77PZY|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of the vacant Candida albicans 80S ribosomeElectron microscopy2.322022-05-18
86T4Q|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
97Q08|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of Candida albicans 80S ribosome in complex with cycloheximideElectron microscopy2.562022-05-25
107MPJ|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.72022-05-11
117Q0F|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of Candida albicans 80S ribosome in complex with phyllanthosideElectron microscopy2.642022-05-18
127Q0R|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of the Candida albicans 80S ribosome in complex with blasticidin sElectron microscopy2.672022-05-25
134U4R|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
146WOO|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
156TB3|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
166SNT|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
177Q0P|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of the Candida albicans 80S ribosome in complex with anisomycinElectron microscopy2.772022-05-18
184U3U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
194U4R|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
207A1G|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexElectron microscopy32020-10-14
216ZVI|1|hSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Mbf1-ribosome complexElectron microscopy32020-09-09
224U3U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
234U3M|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
244U4Q|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
254U4U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
264U52|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
274U3M|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
284U52|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
294U4U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
304U4Q|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15TBW|1|sRCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31783
24U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
34U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
44U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
54V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
64U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
74U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
84U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
97Q0R|1|AStructure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.671692
107Q0P|1|AStructure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.771692
117PZY|1|AStructure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.321692
127Q0F|1|AStructure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.641692
137Q08|1|AStructure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.561692
147OSM|1|18SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31732
157A1G|1|2Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY31771
164U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
174U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
184U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
195TBW|1|ACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31781
204V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
214U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
224U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
234U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
247MPJ|1|B5Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.71744
257OSA|1|18SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31717
266T4Q|1|C2Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.61771
276SNT|1|2Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.81771
286TB3|1|2yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.81771
296WOO|1|2CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.91780
306ZVI|1|hMbf1-ribosome complexELECTRON MICROSCOPY31758

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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