Equivalence class NR_3.0_06650.24 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O7Y|1|B5+ 7O7Y|1|B8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 2021-06-02 |
| 2 | 7O7Z|1|B5+ 7O7Z|1|B8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 2021-06-02 |
| 3 | 7O80|1|B5+ 7O80|1|B8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron microscopy | 2.9 | 2021-06-02 |
| 4 | 7OBR|1|5+ 7OBR|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | RNC-SRP early complex | Electron microscopy | 2.8 | 2021-07-21 |
| 5 | 6SGC|1|54+ 6SGC|1|84 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome stalled on a poly(A) tail | Electron microscopy | 2.8 | 2019-12-04 |
| 6 | 7QWQ|1|5+ 7QWQ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Ternary complex of ribosome nascent chain with SRP and NAC | Electron microscopy | 2.83 | 2022-03-16 |
| 7 | 7UCK|1|5+ 7UCK|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28s rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | Electron microscopy | 2.8 | 2022-06-01 |
| 8 | 7TOR|1|A28S+ 7TOR|1|A58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 2022-05-25 |
| 9 | 7QWR|1|5+ 7QWR|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | Electron microscopy | 2.9 | 2022-03-09 |
| 10 | 6R5Q|1|5+ 6R5Q|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | Electron microscopy | 3 | 2019-07-10 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_06650.24 | NR_3.0_06650.23 | 3.233 | (9) 6R5Q|1|5+6R5Q|1|8, 6SGC|1|54+6SGC|1|84, 7O7Y|1|B5+7O7Y|1|B8, 7O7Z|1|B5+7O7Z|1|B8, 7O80|1|B5+7O80|1|B8, 7OBR|1|5+7OBR|1|8, 7QWQ|1|5+7QWQ|1|8, 7QWR|1|5+7QWR|1|8, 7TOR|1|A28S+7TOR|1|A58S | (1) 7UCK|1|5+7UCK|1|8 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_06650.24 | NR_3.0_06650.25 | 3.240 | (10) 6R5Q|1|5+6R5Q|1|8, 6SGC|1|54+6SGC|1|84, 7O7Y|1|B5+7O7Y|1|B8, 7O7Z|1|B5+7O7Z|1|B8, 7O80|1|B5+7O80|1|B8, 7OBR|1|5+7OBR|1|8, 7QWQ|1|5+7QWQ|1|8, 7QWR|1|5+7QWR|1|8, 7TOR|1|A28S+7TOR|1|A58S, 7UCK|1|5+7UCK|1|8 | (0) | (1) 7OYD|1|5+7OYD|1|8 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7UCK|1|5+ 7UCK|1|8 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | ELECTRON MICROSCOPY | 2.8 | 3446 | |
| 2 | 6SGC|1|54+ 6SGC|1|84 | Rabbit 80S ribosome stalled on a poly(A) tail | ELECTRON MICROSCOPY | 2.8 | 3603 | |
| 3 | 6R5Q|1|5+ 6R5Q|1|8 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | ELECTRON MICROSCOPY | 3 | 3543 | |
| 4 | 7O80|1|B5+ 7O80|1|B8 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | ELECTRON MICROSCOPY | 2.9 | 3640 | |
| 5 | 7O7Z|1|B5+ 7O7Z|1|B8 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 3640 | |
| 6 | 7O7Y|1|B5+ 7O7Y|1|B8 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 3640 | |
| 7 | 7TOR|1|A28S+ 7TOR|1|A58S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 3552 | |
| 8 | 7OBR|1|5+ 7OBR|1|8 | RNC-SRP early complex | ELECTRON MICROSCOPY | 2.8 | 3493 | |
| 9 | 7QWQ|1|5+ 7QWQ|1|8 | Ternary complex of ribosome nascent chain with SRP and NAC | ELECTRON MICROSCOPY | 2.83 | 3493 | |
| 10 | 7QWR|1|5+ 7QWR|1|8 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | ELECTRON MICROSCOPY | 2.9 | 3493 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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