| 1 | 5TBW|1|AS (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 2 | 5TBW|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 3 | 4V88|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 4 | 4V88|1|A7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 5 | 7OSA|1|AB | 5S ribosomal RNA | 5S | Saccharomyces cerevisiae | Eukarya | RF00001 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 6 | 7OSM|1|AB | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 7 | 7UOO|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | Electron microscopy | 2.34 | 2023-03-15 |
| 8 | 7V08|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain | Electron microscopy | 2.36 | 2023-03-15 |
| 9 | 7ZW0|1|LC | 5S ribosomal RNA | 5S ribosomal RNA (RDN5-1) | Saccharomyces cerevisiae W303 | Eukarya | RF00001 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 2022-10-05 |
| 10 | 8AGX|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 2023-03-08 |
| 11 | 7TOP|1|A5S | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.4 | 2022-05-25 |
| 12 | 7UQB|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 | Electron microscopy | 2.43 | 2023-03-15 |
| 13 | 7UQZ|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | Electron microscopy | 2.44 | 2023-03-15 |
| 14 | 7ZUX|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 2023-02-22 |
| 15 | 8AAF|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 2023-03-08 |
| 16 | 6T4Q|1|C4 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 2019-12-25 |
| 17 | 8AGW|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state D | Electron microscopy | 2.6 | 2023-03-08 |
| 18 | 8AGT|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state F | Electron microscopy | 2.6 | 2023-03-08 |
| 19 | 8AGV|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state H | Electron microscopy | 2.6 | 2023-03-08 |
| 20 | 8AGZ|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | Electron microscopy | 2.6 | 2023-03-08 |
| 21 | 8HFR|1|2f | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF00001 | NPC-trapped pre-60S particle | Electron microscopy | 2.64 | 2023-04-12 |
| 22 | 8AGU|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state E | Electron microscopy | 2.7 | 2023-03-08 |
| 23 | 7TOO|1|A5S | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.7 | 2022-05-25 |
| 24 | 7MPJ|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Stm1 bound vacant 80S structure isolated from nop1-D243A | Electron microscopy | 2.7 | 2022-05-11 |
| 25 | 6TB3|1|BR | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 2020-04-22 |
| 26 | 6SNT|1|4 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 2020-03-04 |
| 27 | 7AZY|1|F | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF00001 | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | Electron microscopy | 2.877 | 2021-05-19 |
| 28 | 4U4R|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 29 | 4U3U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 30 | 6WOO|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 2020-09-23 |
| 31 | 7UG6|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF00001 | Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922 | Electron microscopy | 2.9 | 2022-12-21 |
| 32 | 4U4R|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 33 | 4U3U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 34 | 4U4Q|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 35 | 4U4Q|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 36 | 4U3M|1|7 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 37 | 4U52|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 38 | 4U3M|1|3 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 39 | 4U4U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 40 | 6YLG|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | Electron microscopy | 3 | 2020-07-29 |
| 41 | 4U52|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 42 | 4U4U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |