Equivalence class NR_3.0_35542.77 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5L4O|1|A (rep) | Transfer RNA | tRNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Structure of an E.coli initiator tRNAfMet A1-U72 variant | X-ray diffraction | 2.8 | 2017-03-01 |
| 2 | 5HCQ|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
| 3 | 5IBB|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 4 | 6CAE|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
| 5 | 5HCQ|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
| 6 | 5IB7|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-ray diffraction | 2.99 | 2016-05-25 |
| 7 | 4V8D|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 5HCR|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
| 9 | 4Z8C|1|1x | Transfer RNA | Initiator Methionine tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
| 10 | 5J4B|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 11 | 4WSD|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 12 | 4V8D|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
| 13 | 5IBB|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 14 | 5J4B|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 15 | 4Z8C|1|2x | Transfer RNA | Initiator Methionine tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
| 16 | 4WSD|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 17 | 6CAE|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
| 18 | 5J4C|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
| 19 | 4WPO|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 20 | 5W4K|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
| 21 | 1VY4|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 22 | 6OF1|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-ray diffraction | 2.8 | 2019-04-17 |
| 23 | 4W2H|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 24 | 5HCR|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
| 25 | 4LNT|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
| 26 | 5HD1|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
| 27 | 5HCP|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 |
| 28 | 6OF1|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-ray diffraction | 2.8 | 2019-04-17 |
| 29 | 5HAU|1|1w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
| 30 | 5J4C|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
| 31 | 4W2I|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 32 | 5WIS|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
| 33 | 5IB7|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-ray diffraction | 2.99 | 2016-05-25 |
| 34 | 4W2G|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 35 | 6XQD|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-ray diffraction | 2.8 | 2020-08-05 |
| 36 | 4LNT|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
| 37 | 6ND5|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
| 38 | 4W2H|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 39 | 5W4K|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
| 40 | 5HAU|1|2w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
| 41 | 6XQD|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-ray diffraction | 2.8 | 2020-08-05 |
| 42 | 4Y4P|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 43 | 4W2G|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 44 | 6O97|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-ray diffraction | 2.75 | 2019-04-17 |
| 45 | 5HCP|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 |
| 46 | 5DOY|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 47 | 5WIT|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
| 48 | 5HD1|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
| 49 | 4W2I|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 50 | 6ND5|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
| 51 | 1VY7|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 52 | 4Z3S|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 53 | 1VY4|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 54 | 4W2F|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 55 | 1VY5|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 56 | 4V51|1|CV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 57 | 4WPO|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 58 | 7JQL|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-26 |
| 59 | 7JQL|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-26 |
| 60 | 4V9R|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
| 61 | 4V9R|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
| 62 | 4W2F|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 63 | 5WIS|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
| 64 | 4V51|1|AV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 65 | 6ND6|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
| 66 | 6O97|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-ray diffraction | 2.75 | 2019-04-17 |
| 67 | 4Y4P|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 68 | 1VY6|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
| 69 | 4Z3S|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 70 | 6UO1|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
| 71 | 6UO1|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
| 72 | 1VY6|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
| 73 | 4WQY|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
| 74 | 5DOY|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 75 | 5WIT|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
| 76 | 5F8K|1|1x | Transfer RNA | mRNA, tRNAiMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
| 77 | 6ND6|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
| 78 | 1VY5|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 79 | 4V8B|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 80 | 6XQE|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-05 |
| 81 | 4V67|1|AY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 82 | 6XQE|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-05 |
| 83 | 4V7L|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 84 | 4V8B|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 85 | 4V7L|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 86 | 5F8K|1|2x | Transfer RNA | mRNA, tRNAiMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
| 87 | 4V67|1|CY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 88 | 4WQY|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
| 89 | 1VY7|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 90 | 4V8B|1|AD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 91 | 4V8B|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 92 | 4V67|1|AZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 93 | 4V67|1|CZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 94 | 6GSJ|1|2L | Transfer RNA | RNA (27-MER), tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-ray diffraction | 2.96 | 2018-07-04 |
| 95 | 6GSJ|1|2K | Transfer RNA | RNA (27-MER), tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-ray diffraction | 2.96 | 2018-07-04 |
| 96 | 7K00|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2020-09-23 |
| 97 | 6XZ7|1|f | Transfer RNA | Deacylated tRNAi(Met) | Escherichia coli | Bacteria | RF00005 | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | Electron microscopy | 2.1 | 2020-07-22 |
| 98 | 6XZB|1|f2 | Transfer RNA | Deacylated tRNAi(Met) | Escherichia coli K-12 | Bacteria | RF00005 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.54 | 2020-11-04 |
| 99 | 6XZA|1|f2 | Transfer RNA | Deacylated tRNAi(Met) | Escherichia coli K-12 | Bacteria | RF00005 | E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.66 | 2020-11-04 |
| 100 | 6AZ1|1|3 | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.7 | 2017-12-06 |
| 101 | 6Y69|1|w | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX | Electron microscopy | 2.86 | 2020-07-01 |
| 102 | 5AFI|1|v | Transfer RNA | mRNA, P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 103 | 5AFI|1|w | Transfer RNA | P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 104 | 6WDE|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | Electron microscopy | 3 | 2020-07-01 |
| 105 | 6H4N|1|w | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | Electron microscopy | 3 | 2018-09-05 |
| 106 | 6WD0|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | Electron microscopy | 3 | 2020-07-01 |
| 107 | 6WDE|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | Electron microscopy | 3 | 2020-07-01 |
| 108 | 6WD0|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | Electron microscopy | 3 | 2020-07-01 |
| 109 | 5WDT|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
| 110 | 5WFS|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
| 111 | 5WDT|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
| 112 | 5WFS|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
| 113 | 6ORE|1|5 | Transfer RNA | P-tRNA, RNA (5'-R(P*UP*UP*CP*UP*UP*CP*UP*AP*A)-3') | Escherichia coli | Bacteria | RF00005 | Release complex 70S | Electron microscopy | 2.9 | 2019-06-19 |
| 114 | 5MDV|1|5 | Transfer RNA | fMet-NH-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
| 115 | 6ZTP|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 6 | Electron microscopy | 3 | 2020-09-16 |
| 116 | 6ZU1|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 2 | Electron microscopy | 3 | 2020-09-16 |
| 117 | 6ZTO|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 1 | Electron microscopy | 3 | 2020-09-23 |
| 118 | 2FMT|1|D | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
| 119 | 2FMT|1|C | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
| 120 | 6YSI|1|8+ 6YSI|1|6 | Transfer RNA + Transfer RNA | E-site tRNA | Acinetobacter baumannii | Bacteria | RF00005 + RF00005 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | Electron microscopy | 2.5 | 2020-09-16 |
| 121 | 5IQR|1|5 | Transfer RNA | mRNA, P-site fMet-tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 122 | 6YS5|1|7 | Transfer RNA | E-site tRNA, mRNA | Acinetobacter baumannii | Bacteria | RF00005 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
| 123 | 6YTF|1|7 | Transfer RNA | E-site tRNA, mRNA | Acinetobacter baumannii | Bacteria | RF00005 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
Release history
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6YSI|1|8+ 6YSI|1|6 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | ELECTRON MICROSCOPY | 2.5 | 8 | |
| 2 | 5WFS|1|w | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 73 | |
| 3 | 5AFI|1|w | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 4 | 5WDT|1|w | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 73 | |
| 5 | 6WD0|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | ELECTRON MICROSCOPY | 3 | 77 | |
| 6 | 4V8B|1|AD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 7 | 4V8B|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 8 | 4V67|1|AZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 9 | 4V67|1|CZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 10 | 6WDE|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | ELECTRON MICROSCOPY | 3 | 77 | |
| 11 | 6H4N|1|w | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | ELECTRON MICROSCOPY | 3 | 77 | |
| 12 | 6Y69|1|w | Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX | ELECTRON MICROSCOPY | 2.86 | 74 | |
| 13 | 5WDT|1|v | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 73 | |
| 14 | 5WFS|1|v | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 73 | |
| 15 | 5AFI|1|v | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 16 | 7K00|1|Z | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 76 | |
| 17 | 4V8B|1|AC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 18 | 4V8B|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 19 | 6GSJ|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | |
| 20 | 5IBB|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 71 | |
| 21 | 4V8D|1|CC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 22 | 4WSD|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
| 23 | 5IB7|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-RAY DIFFRACTION | 2.99 | 72 | |
| 24 | 4WSD|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
| 25 | 4V8D|1|AC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 26 | 5IB7|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-RAY DIFFRACTION | 2.99 | 72 | |
| 27 | 6GSJ|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | |
| 28 | 5IBB|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | |
| 29 | 4Z8C|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 72 | |
| 30 | 5HCQ|1|2x | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
| 31 | 5HCP|1|2x | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 72 | |
| 32 | 5HCR|1|2x | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
| 33 | 5HD1|1|2x | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 72 | |
| 34 | 5HD1|1|1x | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 72 | |
| 35 | 5HCR|1|1x | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
| 36 | 5HCP|1|1x | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 72 | |
| 37 | 5HCQ|1|1x | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
| 38 | 4Z8C|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 72 | |
| 39 | 5HAU|1|1w | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 72 | |
| 40 | 5HAU|1|2w | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 72 | |
| 41 | 5DOY|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
| 42 | 4W2I|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
| 43 | 4Z3S|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 71 | |
| 44 | 6XZA|1|f2 | E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification). | ELECTRON MICROSCOPY | 2.66 | 72 | |
| 45 | 6XZ7|1|f | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | ELECTRON MICROSCOPY | 2.1 | 72 | |
| 46 | 6XZB|1|f2 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | ELECTRON MICROSCOPY | 2.54 | 72 | |
| 47 | 1VY5|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
| 48 | 1VY4|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
| 49 | 4W2G|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
| 50 | 1VY7|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
| 51 | 1VY6|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
| 52 | 4WPO|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
| 53 | 4WQY|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
| 54 | 4V9R|1|AX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
| 55 | 6XQD|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
| 56 | 6XQD|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
| 57 | 6XQE|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
| 58 | 4W2H|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
| 59 | 4W2F|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
| 60 | 5J4B|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 61 | 5J4C|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
| 62 | 5WIT|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 63 | 4Y4P|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
| 64 | 5W4K|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
| 65 | 5WIS|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
| 66 | 6ND6|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 72 | |
| 67 | 6OF1|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
| 68 | 6CAE|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 69 | 6O97|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 72 | |
| 70 | 6ND5|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 71 | 6UO1|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-RAY DIFFRACTION | 2.95 | 72 | |
| 72 | 7JQL|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
| 73 | 5F8K|1|1x | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
| 74 | 6XQE|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
| 75 | 5F8K|1|2x | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
| 76 | 6WD0|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | ELECTRON MICROSCOPY | 3 | 77 | |
| 77 | 6WDE|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | ELECTRON MICROSCOPY | 3 | 77 | |
| 78 | 4V67|1|CY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 79 | 4V67|1|AY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 80 | 4V51|1|CV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 81 | 4V51|1|AV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 82 | 4V7L|1|AX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
| 83 | 4V7L|1|CX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
| 84 | 4LNT|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
| 85 | 4LNT|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
| 86 | 5WIT|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 87 | 6OF1|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
| 88 | 6CAE|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 89 | 6O97|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 72 | |
| 90 | 6ND6|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 72 | |
| 91 | 5J4C|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
| 92 | 5J4B|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 93 | 5W4K|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
| 94 | 4Y4P|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
| 95 | 5WIS|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
| 96 | 6ND5|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
| 97 | 4WPO|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
| 98 | 4WQY|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
| 99 | 1VY6|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
| 100 | 4W2F|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
| 101 | 4W2G|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
| 102 | 1VY5|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
| 103 | 1VY4|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
| 104 | 4W2H|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
| 105 | 4V9R|1|CX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
| 106 | 4W2I|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
| 107 | 5DOY|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
| 108 | 4Z3S|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 71 | |
| 109 | 7JQL|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
| 110 | 6UO1|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-RAY DIFFRACTION | 2.95 | 72 | |
| 111 | 1VY7|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
| 112 | 6ZTP|1|AW | E. coli 70S-RNAP expressome complex in uncoupled state 6 | ELECTRON MICROSCOPY | 3 | 72 | |
| 113 | 6ZU1|1|AW | E. coli 70S-RNAP expressome complex in uncoupled state 2 | ELECTRON MICROSCOPY | 3 | 72 | |
| 114 | 6ZTO|1|AW | E. coli 70S-RNAP expressome complex in uncoupled state 1 | ELECTRON MICROSCOPY | 3 | 72 | |
| 115 | 5MDV|1|5 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 70 | |
| 116 | 5IQR|1|5 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 72 | |
| 117 | 6ORE|1|5 | Release complex 70S | ELECTRON MICROSCOPY | 2.9 | 71 | |
| 118 | 6YTF|1|7 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 20 | |
| 119 | 6AZ1|1|3 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | ELECTRON MICROSCOPY | 2.7 | 77 | |
| 120 | 6YS5|1|7 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 20 | |
| 121 | 2FMT|1|D | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
| 122 | 2FMT|1|C | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
| 123 | 5L4O|1|A | Structure of an E.coli initiator tRNAfMet A1-U72 variant | X-RAY DIFFRACTION | 2.8 | 71 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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