Equivalence class NR_3.0_36270.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2PWT|1|A+ 2PWT|1|B (rep) | 22-mer of the ribosomal decoding site | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-ray diffraction | 1.8 | 2007-09-18 | ||||
2 | 2F4S|1|A+ 2F4S|1|B | 5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | A-site RNA in complex with neamine | X-ray diffraction | 2.8 | 2006-05-02 | ||||
3 | 3BNN|1|A+ 3BNN|1|B | A site of human ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-ray diffraction | 2 | 2008-06-24 | ||||
4 | 3S4P|1|A+ 3S4P|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue | X-ray diffraction | 2.56 | 2011-09-21 | ||||
5 | 4F8V|1|A+ 4F8V|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) | X-ray diffraction | 2.8 | 2012-08-15 | ||||
6 | 2F4U|1|A+ 2F4U|1|B | 5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Asite RNA + designer antibiotic | X-ray diffraction | 2.6 | 2006-05-02 | ||||
7 | 3BNN|1|C+ 3BNN|1|D | A site of human ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-ray diffraction | 2 | 2008-06-24 | ||||
8 | 3BNO|1|A+ 3BNO|1|B | A site of human mitochondrial ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-ray diffraction | 2.35 | 2008-06-24 | ||||
9 | 3BNO|1|C+ 3BNO|1|D | A site of human mitochondrial ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-ray diffraction | 2.35 | 2008-06-24 |
Release history
Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
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Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 3BNO|1|C+ 3BNO|1|D | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-RAY DIFFRACTION | 2.35 | 20 | |
2 | 3BNN|1|C+ 3BNN|1|D | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-RAY DIFFRACTION | 2 | 21 | |
3 | 3BNO|1|A+ 3BNO|1|B | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-RAY DIFFRACTION | 2.35 | 20 | |
4 | 3BNN|1|A+ 3BNN|1|B | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-RAY DIFFRACTION | 2 | 21 | |
5 | 4F8V|1|A+ 4F8V|1|B | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) | X-RAY DIFFRACTION | 2.8 | 21 | |
6 | 2PWT|1|A+ 2PWT|1|B | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-RAY DIFFRACTION | 1.8 | 21 | |
7 | 3S4P|1|A+ 3S4P|1|B | Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue | X-RAY DIFFRACTION | 2.56 | 21 | |
8 | 2F4U|1|A+ 2F4U|1|B | Asite RNA + designer antibiotic | X-RAY DIFFRACTION | 2.6 | 21 | |
9 | 2F4S|1|A+ 2F4S|1|B | A-site RNA in complex with neamine | X-RAY DIFFRACTION | 2.8 | 21 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: