Equivalence class NR_3.0_46995.30 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GLP|1|S2 (rep) | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 2023-04-19 |
| 2 | 7R4X|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map | Electron microscopy | 2.15 | 2023-02-22 |
| 3 | 8G5Y|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | Electron microscopy | 2.29 | 2023-04-19 |
| 4 | 6ZMI|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | Electron microscopy | 2.6 | 2020-08-19 |
| 5 | 7XNY|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | Electron microscopy | 2.5 | 2023-04-05 |
| 6 | 6ZM7|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 2020-07-29 |
| 7 | 6ZLW|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | Electron microscopy | 2.6 | 2020-07-29 |
| 8 | 7XNX|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | Electron microscopy | 2.7 | 2023-04-05 |
| 9 | 6ZVH|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | EDF1-ribosome complex | Electron microscopy | 2.9 | 2020-08-19 |
| 10 | 6Z6N|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 2020-07-29 |
| 11 | 8G5Z|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | Electron microscopy | 2.64 | 2023-04-19 |
| 12 | 8G60|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | Electron microscopy | 2.54 | 2023-04-19 |
| 13 | 6ZOJ|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, composite map | Electron microscopy | 2.8 | 2020-07-22 |
| 14 | 6ZP4|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | Electron microscopy | 2.9 | 2020-07-29 |
| 15 | 6ZXG|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 | Electron microscopy | 2.6 | 2020-12-02 |
| 16 | 6ZME|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 2020-08-12 |
| 17 | 6Z6L|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 2020-07-29 |
| 18 | 6QZP|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1740-MER) | Homo sapiens | Eukarya | RF01960 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 19 | 6ZV6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) | Electron microscopy | 2.9 | 2021-05-12 |
| 20 | 6ZON|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | Electron microscopy | 3 | 2020-07-29 |
| 21 | 6ZXH|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 | Electron microscopy | 2.7 | 2020-12-16 |
| 22 | 7QVP|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 23 | 7K5I|1|2 | Small subunit ribosomal RNA | 40S ribosomal rRNA18S | Homo sapiens | Eukarya | RF01960 | SARS-COV-2 nsp1 in complex with human 40S ribosome | Electron microscopy | 2.9 | 2020-10-14 |
| 24 | 8G6J|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | Electron microscopy | 2.8 | 2023-04-19 |
| 25 | 7QVP|1|S3 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 26 | 7MQA|1|L1 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human SSU processome, state post-A1 | Electron microscopy | 2.7 | 2021-09-22 |
| 27 | 6ZXE|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 | Electron microscopy | 3 | 2020-12-02 |
| 28 | 6Y2L|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in POST state | Electron microscopy | 3 | 2020-04-15 |
| 29 | 8G61|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | Electron microscopy | 2.94 | 2023-04-19 |
| 30 | 6XA1|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a drug-like compound stalled human translation termination complex | Electron microscopy | 2.8 | 2020-10-07 |
| 31 | 7WTZ|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2 | Electron microscopy | 3 | 2022-10-19 |
| 32 | 7WTU|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1) | Electron microscopy | 3 | 2022-10-19 |
| 33 | 6ZMT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | Electron microscopy | 3 | 2020-08-19 |
| 34 | 6ZOK|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, focused on body | Electron microscopy | 2.8 | 2020-07-29 |
| 35 | 6ZOL|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, focused on head | Electron microscopy | 2.8 | 2020-07-22 |
Release history
| Release | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_46995.30 | NR_3.0_46995.29 | 3.279 | (29) 6QZP|1|S2, 6XA1|1|S2, 6Y2L|1|S2, 6Z6L|1|S2, 6Z6N|1|S2, 6ZLW|1|2, 6ZM7|1|S2, 6ZME|1|S2, 6ZMI|1|S2, 6ZMT|1|2, 6ZOJ|1|2, 6ZOK|1|2, 6ZOL|1|2, 6ZON|1|2, 6ZP4|1|2, 6ZV6|1|2, 6ZVH|1|2, 6ZXE|1|2, 6ZXG|1|2, 6ZXH|1|2, 7K5I|1|2, 7MQA|1|L1, 7QVP|1|S2, 7QVP|1|S3, 7R4X|1|2, 7WTU|1|2, 7WTZ|1|2, 7XNX|1|S2, 7XNY|1|S2 | (6) 8G5Y|1|S2, 8G5Z|1|S2, 8G60|1|S2, 8G61|1|S2, 8G6J|1|S2, 8GLP|1|S2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_46995.30 | NR_3.0_46995.31 | 3.303 | (35) 6QZP|1|S2, 6XA1|1|S2, 6Y2L|1|S2, 6Z6L|1|S2, 6Z6N|1|S2, 6ZLW|1|2, 6ZM7|1|S2, 6ZME|1|S2, 6ZMI|1|S2, 6ZMT|1|2, 6ZOJ|1|2, 6ZOK|1|2, 6ZOL|1|2, 6ZON|1|2, 6ZP4|1|2, 6ZV6|1|2, 6ZVH|1|2, 6ZXE|1|2, 6ZXG|1|2, 6ZXH|1|2, 7K5I|1|2, 7MQA|1|L1, 7QVP|1|S2, 7QVP|1|S3, 7R4X|1|2, 7WTU|1|2, 7WTZ|1|2, 7XNX|1|S2, 7XNY|1|S2, 8G5Y|1|S2, 8G5Z|1|S2, 8G60|1|S2, 8G61|1|S2, 8G6J|1|S2, 8GLP|1|S2 | (0) | (1) 8T4S|1|2 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6ZXE|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 | ELECTRON MICROSCOPY | 3 | 1645 | |
| 2 | 6ZMT|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | ELECTRON MICROSCOPY | 3 | 1569 | |
| 3 | 6ZP4|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 1721 | |
| 4 | 6ZOL|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on head | ELECTRON MICROSCOPY | 2.8 | 472 | |
| 5 | 7K5I|1|2 | SARS-COV-2 nsp1 in complex with human 40S ribosome | ELECTRON MICROSCOPY | 2.9 | 1665 | |
| 6 | 6ZLW|1|2 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | ELECTRON MICROSCOPY | 2.6 | 1665 | |
| 7 | 6ZME|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 1740 | |
| 8 | 6ZM7|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 1740 | |
| 9 | 6ZMI|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 1740 | |
| 10 | 6Z6L|1|S2 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 1740 | |
| 11 | 6Z6N|1|S2 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 1740 | |
| 12 | 7XNY|1|S2 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | ELECTRON MICROSCOPY | 2.5 | 1687 | |
| 13 | 7XNX|1|S2 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | ELECTRON MICROSCOPY | 2.7 | 1686 | |
| 14 | 6QZP|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1707 | |
| 15 | 6ZVH|1|2 | EDF1-ribosome complex | ELECTRON MICROSCOPY | 2.9 | 1740 | |
| 16 | 6XA1|1|S2 | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 1512 | |
| 17 | 6Y2L|1|S2 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 1713 | |
| 18 | 7QVP|1|S2 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 1714 | |
| 19 | 8G60|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | ELECTRON MICROSCOPY | 2.54 | 1569 | |
| 20 | 8G5Y|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | ELECTRON MICROSCOPY | 2.29 | 1595 | |
| 21 | 8GLP|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 1587 | |
| 22 | 8G6J|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | ELECTRON MICROSCOPY | 2.8 | 1616 | |
| 23 | 8G5Z|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | ELECTRON MICROSCOPY | 2.64 | 1616 | |
| 24 | 8G61|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | ELECTRON MICROSCOPY | 2.94 | 1598 | |
| 25 | 7QVP|1|S3 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 1705 | |
| 26 | 6ZXG|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 | ELECTRON MICROSCOPY | 2.6 | 1577 | |
| 27 | 6ZXH|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 | ELECTRON MICROSCOPY | 2.7 | 1577 | |
| 28 | 6ZV6|1|2 | Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) | ELECTRON MICROSCOPY | 2.9 | 1681 | |
| 29 | 7R4X|1|2 | Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map | ELECTRON MICROSCOPY | 2.15 | 1580 | |
| 30 | 6ZON|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | ELECTRON MICROSCOPY | 3 | 1721 | |
| 31 | 6ZOJ|1|2 | SARS-CoV-2-Nsp1-40S complex, composite map | ELECTRON MICROSCOPY | 2.8 | 1704 | |
| 32 | 6ZOK|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on body | ELECTRON MICROSCOPY | 2.8 | 1232 | |
| 33 | 7WTZ|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2 | ELECTRON MICROSCOPY | 3 | 1624 | |
| 34 | 7WTU|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1) | ELECTRON MICROSCOPY | 3 | 1574 | |
| 35 | 7MQA|1|L1 | Cryo-EM structure of the human SSU processome, state post-A1 | ELECTRON MICROSCOPY | 2.7 | 1570 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: