Equivalence class NR_3.0_51266.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1ZDK|1|S (rep) | RNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3') | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | X-ray diffraction | 2.86 | 19 | 1998-12-07 | ||||
| 2 | 2C4Z|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (2SU -5-6) COMPLEX | X-ray diffraction | 2.6 | 17 | 2006-01-05 | |||
| 3 | 2C4Y|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX | X-ray diffraction | 2.68 | 17 | 2006-01-05 | |||
| 4 | 2C4Q|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (2ONE -5) COMPLEX | X-ray diffraction | 2.38 | 17 | 2005-11-07 | |||
| 5 | 2BU1|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (5BRU -5) COMPLEX | X-ray diffraction | 2.2 | 17 | 2005-08-18 | |||
| 6 | 2C4Q|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (2ONE -5) COMPLEX | X-ray diffraction | 2.38 | 17 | 2005-11-07 | |||
| 7 | 2BU1|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (5BRU -5) COMPLEX | X-ray diffraction | 2.2 | 17 | 2005-08-18 | |||
| 8 | 2C4Z|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (2SU -5-6) COMPLEX | X-ray diffraction | 2.6 | 13 | 2006-01-05 | |||
| 9 | 2IZ9|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (4ONE -5) COMPLEX | X-ray diffraction | 2.85 | 15 | 2006-07-27 | |||
| 10 | 2BQ5|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2 (N87AE89K mutant) - RNA hairpin complex | X-ray diffraction | 2.91 | 17 | 2006-03-22 | |||
| 11 | 2BNY|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2 (N87A mutant) - RNA hairpin complex | X-ray diffraction | 3 | 15 | 2006-03-22 | |||
| 12 | 2C51|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (G -5) COMPLEX | X-ray diffraction | 2.8 | 15 | 2006-01-05 | |||
| 13 | 2C4Y|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX | X-ray diffraction | 2.68 | 13 | 2006-01-05 | |||
| 14 | 2BQ5|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2 (N87AE89K mutant) - RNA hairpin complex | X-ray diffraction | 2.91 | 19 | 2006-03-22 | |||
| 15 | 1ZDI|1|R | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') | RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX | X-ray diffraction | 2.7 | 16 | 1997-04-21 | ||||
| 16 | 1AQ3|1|R | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') | BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX | X-ray diffraction | 2.8 | 16 | 1997-12-24 | ||||
| 17 | 1AQ4|1|R | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') | Escherichia virus MS2 | STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR | X-ray diffraction | 3 | 16 | 1997-12-24 | |||
| 18 | 1ZDH|1|R | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3') | synthetic construct | MS2 COAT PROTEIN/RNA COMPLEX | X-ray diffraction | 2.7 | 13 | 1997-04-21 | |||
| 19 | 2IZM|1|R | 5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (C-10) COMPLEX | X-ray diffraction | 2.7 | 13 | 2007-07-03 | |||
| 20 | 1ZDI|1|S | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') | RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX | X-ray diffraction | 2.7 | 13 | 1997-04-21 | ||||
| 21 | 1ZDH|1|S | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3') | synthetic construct | MS2 COAT PROTEIN/RNA COMPLEX | X-ray diffraction | 2.7 | 13 | 1997-04-21 | |||
| 22 | 2IZM|1|S | 5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (C-10) COMPLEX | X-ray diffraction | 2.7 | 13 | 2007-07-03 | |||
| 23 | 2BNY|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2 (N87A mutant) - RNA hairpin complex | X-ray diffraction | 3 | 13 | 2006-03-22 | |||
| 24 | 2C50|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (A -5) COMPLEX | X-ray diffraction | 2.65 | 13 | 2006-01-05 | |||
| 25 | 2C51|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (G -5) COMPLEX | X-ray diffraction | 2.8 | 13 | 2006-01-05 | |||
| 26 | 2C50|1|R | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (A -5) COMPLEX | X-ray diffraction | 2.65 | 14 | 2006-01-05 | |||
| 27 | 1AQ4|1|S | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') | Escherichia virus MS2 | STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR | X-ray diffraction | 3 | 14 | 1997-12-24 | |||
| 28 | 2IZ9|1|S | 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3' | Escherichia virus MS2 | MS2-RNA HAIRPIN (4ONE -5) COMPLEX | X-ray diffraction | 2.85 | 15 | 2006-07-27 | |||
| 29 | 1ZDK|1|R | RNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3') | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | X-ray diffraction | 2.86 | 19 | 1998-12-07 | ||||
| 30 | 1AQ3|1|S | RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') | BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX | X-ray diffraction | 2.8 | 12 | 1997-12-24 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 |
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| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_51266.1 | NR_3.0_51266.2 | 3.0 | (30) 1AQ3|1|R, 1AQ3|1|S, 1AQ4|1|R, 1AQ4|1|S, 1ZDH|1|R, 1ZDH|1|S, 1ZDI|1|R, 1ZDI|1|S, 1ZDK|1|R, 1ZDK|1|S, 2BNY|1|R, 2BNY|1|S, 2BQ5|1|R, 2BQ5|1|S, 2BU1|1|R, 2BU1|1|S, 2C4Q|1|R, 2C4Q|1|S, 2C4Y|1|R, 2C4Y|1|S, 2C4Z|1|R, 2C4Z|1|S, 2C50|1|R, 2C50|1|S, 2C51|1|R, 2C51|1|S, 2IZ9|1|R, 2IZ9|1|S, 2IZM|1|R, 2IZM|1|S | (0) | (2) 1KUO|1|R, 1KUO|1|S |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 2BQ5|1|S | MS2 (N87AE89K mutant) - RNA hairpin complex | X-RAY DIFFRACTION | 2.91 | 17 | |
| 2 | 2BNY|1|S | MS2 (N87A mutant) - RNA hairpin complex | X-RAY DIFFRACTION | 3 | 13 | |
| 3 | 2C4Y|1|S | MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX | X-RAY DIFFRACTION | 2.68 | 13 | |
| 4 | 2C4Z|1|S | MS2-RNA HAIRPIN (2SU -5-6) COMPLEX | X-RAY DIFFRACTION | 2.6 | 13 | |
| 5 | 2C51|1|S | MS2-RNA HAIRPIN (G -5) COMPLEX | X-RAY DIFFRACTION | 2.8 | 13 | |
| 6 | 2BU1|1|R | MS2-RNA HAIRPIN (5BRU -5) COMPLEX | X-RAY DIFFRACTION | 2.2 | 17 | |
| 7 | 2C4Q|1|R | MS2-RNA HAIRPIN (2ONE -5) COMPLEX | X-RAY DIFFRACTION | 2.38 | 17 | |
| 8 | 2C4Q|1|S | MS2-RNA HAIRPIN (2ONE -5) COMPLEX | X-RAY DIFFRACTION | 2.38 | 17 | |
| 9 | 2BU1|1|S | MS2-RNA HAIRPIN (5BRU -5) COMPLEX | X-RAY DIFFRACTION | 2.2 | 17 | |
| 10 | 2C50|1|S | MS2-RNA HAIRPIN (A -5) COMPLEX | X-RAY DIFFRACTION | 2.65 | 13 | |
| 11 | 2IZM|1|S | MS2-RNA HAIRPIN (C-10) COMPLEX | X-RAY DIFFRACTION | 2.7 | 13 | |
| 12 | 1AQ3|1|S | BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX | X-RAY DIFFRACTION | 2.8 | 12 | |
| 13 | 1AQ4|1|S | STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR | X-RAY DIFFRACTION | 3 | 14 | |
| 14 | 1ZDI|1|S | RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX | X-RAY DIFFRACTION | 2.7 | 13 | |
| 15 | 1ZDK|1|S | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | X-RAY DIFFRACTION | 2.86 | 19 | |
| 16 | 1ZDH|1|S | MS2 COAT PROTEIN/RNA COMPLEX | X-RAY DIFFRACTION | 2.7 | 13 | |
| 17 | 1ZDK|1|R | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | X-RAY DIFFRACTION | 2.86 | 19 | |
| 18 | 1ZDH|1|R | MS2 COAT PROTEIN/RNA COMPLEX | X-RAY DIFFRACTION | 2.7 | 13 | |
| 19 | 2IZM|1|R | MS2-RNA HAIRPIN (C-10) COMPLEX | X-RAY DIFFRACTION | 2.7 | 13 | |
| 20 | 2BNY|1|R | MS2 (N87A mutant) - RNA hairpin complex | X-RAY DIFFRACTION | 3 | 15 | |
| 21 | 2C51|1|R | MS2-RNA HAIRPIN (G -5) COMPLEX | X-RAY DIFFRACTION | 2.8 | 15 | |
| 22 | 2C50|1|R | MS2-RNA HAIRPIN (A -5) COMPLEX | X-RAY DIFFRACTION | 2.65 | 14 | |
| 23 | 1ZDI|1|R | RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX | X-RAY DIFFRACTION | 2.7 | 16 | |
| 24 | 1AQ4|1|R | STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR | X-RAY DIFFRACTION | 3 | 16 | |
| 25 | 1AQ3|1|R | BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX | X-RAY DIFFRACTION | 2.8 | 16 | |
| 26 | 2BQ5|1|R | MS2 (N87AE89K mutant) - RNA hairpin complex | X-RAY DIFFRACTION | 2.91 | 19 | |
| 27 | 2C4Y|1|R | MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX | X-RAY DIFFRACTION | 2.68 | 17 | |
| 28 | 2C4Z|1|R | MS2-RNA HAIRPIN (2SU -5-6) COMPLEX | X-RAY DIFFRACTION | 2.6 | 17 | |
| 29 | 2IZ9|1|R | MS2-RNA HAIRPIN (4ONE -5) COMPLEX | X-RAY DIFFRACTION | 2.85 | 15 | |
| 30 | 2IZ9|1|S | MS2-RNA HAIRPIN (4ONE -5) COMPLEX | X-RAY DIFFRACTION | 2.85 | 15 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: