#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18GLP|1|L7 (rep)5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)Electron microscopy1.672023-04-19
28A3D|1|B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human mature large subunit of the ribosome with eIF6 and homoharringtonine boundElectron microscopy1.672023-03-08
37OW7|1|B5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001EIF6-bound large subunit of the human ribosomeElectron microscopy2.22022-10-05
48G5Y|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)Electron microscopy2.292023-04-19
57XNY|1|L25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsElectron microscopy2.52023-04-05
68G60|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)Electron microscopy2.542023-04-19
76ZMI|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.62020-08-19
88G5Z|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)Electron microscopy2.642023-04-19
96ZM7|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.72020-07-29
107XNX|1|L25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsElectron microscopy2.72023-04-05
117F5S|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human delta-METTL18 60S ribosomeElectron microscopy2.722022-06-22
128G6J|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)Electron microscopy2.82023-04-19
136XA1|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Structure of a drug-like compound stalled human translation termination complexElectron microscopy2.82020-10-07
146Y6X|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Tetracenomycin X bound to the human ribosomeElectron microscopy2.82020-07-08
156Z6N|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.92020-07-29
166QZP|1|L75S ribosomal RNA5S rRNA (120-MER)Homo sapiensEukaryaRF00001High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
178G61|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)Electron microscopy2.942023-04-19
186Z6L|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy32020-07-29
196ZME|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy32020-08-12
207QVP|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
217QVP|1|L95S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
226Y2L|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome in POST stateElectron microscopy32020-04-15

Release history

Release3.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.290
Date2023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-05

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18G61|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)ELECTRON MICROSCOPY2.94120
28G5Z|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)ELECTRON MICROSCOPY2.64120
38G6J|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)ELECTRON MICROSCOPY2.8120
48G60|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)ELECTRON MICROSCOPY2.54120
58G5Y|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)ELECTRON MICROSCOPY2.29120
68GLP|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)ELECTRON MICROSCOPY1.67120
78A3D|1|BHuman mature large subunit of the ribosome with eIF6 and homoharringtonine boundELECTRON MICROSCOPY1.67120
87F5S|1|L7human delta-METTL18 60S ribosomeELECTRON MICROSCOPY2.72120
97OW7|1|BEIF6-bound large subunit of the human ribosomeELECTRON MICROSCOPY2.2120
106QZP|1|L7High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.9120
116XA1|1|L7Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.8120
126Y6X|1|L7Tetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.8120
136Z6L|1|L7Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY3120
146Z6N|1|L7Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.9120
156ZMI|1|L7SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.6120
166ZM7|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.7120
176ZME|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY3120
187XNY|1|L2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsELECTRON MICROSCOPY2.5120
197XNX|1|L2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsELECTRON MICROSCOPY2.7120
207QVP|1|L7Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY3120
216Y2L|1|L7Structure of human ribosome in POST stateELECTRON MICROSCOPY3120
227QVP|1|L9Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY3120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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