NR_3.0_56726.118

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|AA (rep)	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	4YBB\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	4WOI\|1\|DA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
4	4WOI\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
5	4V9P\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
6	4V9O\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
7	5J7L\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
8	4V9P\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
9	4V9P\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	4V9P\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
11	4V9O\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
12	5J91\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
13	6I7V\|1\|AA	Small subunit ribosomal RNA	16S ribosmal RNA	Escherichia coli	Bacteria	RF00177	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
14	4V9O\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
15	4U27\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
16	4YBB\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
17	4U1U\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
18	4U26\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
19	4V9D\|1\|AA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
20	6I7V\|1\|BA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
21	4U24\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
22	4U25\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
23	4V9D\|1\|BA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
24	4U27\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
25	4V9O\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
26	4U20\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
27	4U1U\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
28	4U1V\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
29	4U25\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
30	4U26\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
31	5J91\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
32	4U24\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
33	4U1V\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
34	4U20\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
35	5J5B\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
36	5J5B\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
37	8B0X\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli B	Bacteria	RF00177	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	2022-11-30
38	8FTO\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosome with an improved MS2 tag inserted in H98	Electron microscopy	1.85	2023-08-02
39	8AYE\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	2023-03-01
40	7K00\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2020-09-23
41	8QOA\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Structure of SecM-stalled Escherichia coli 70S ribosome	Electron microscopy	2	2024-03-20
42	8G6W\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	2023-04-05
43	8BIM\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	Electron microscopy	2.04	2023-08-16
44	8BIL\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	Electron microscopy	2.04	2023-08-16
45	8EMM\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	2023-05-31
46	8QBT\|1\|i	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E. coli ApdP-stalled ribosomal complex	Electron microscopy	2.2	2024-03-20
47	8BGE\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.11	2023-08-16
48	8EIU\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	2023-02-01
49	8BF7\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	2023-08-16
50	7S1H\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2021-11-17
51	7N1P\|1\|16	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
52	8BHL\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.21	2023-08-16
53	8AKN\|1\|B	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00177	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	2023-03-08
54	8HSP\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	Electron microscopy	2.32	2024-04-03
55	7Y7G\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	Electron microscopy	2.34	2023-10-25
56	7S1K\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2022-01-19
57	7S1J\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2022-03-02
58	8HTZ\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	Electron microscopy	2.4	2024-04-03
59	7S1I\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2022-03-02
60	7S1G\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2021-11-17
61	7O1A\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2021-09-01
62	7Y7E\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.41	2023-10-25
63	7Y7F\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	Electron microscopy	2.43	2023-10-25
64	8IFB\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Dibekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.43	2024-02-14
65	8BHP\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.37	2023-08-16
66	7N2U\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	2021-07-14
67	7N2V\|1\|16	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	Electron microscopy	2.54	2021-07-14
68	7Y7C\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)	Electron microscopy	2.51	2023-10-25
69	7Y7H\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)	Electron microscopy	2.51	2023-10-25
70	7SA4\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Damaged 70S ribosome with PrfH bound	Electron microscopy	2.55	2022-08-03
71	6YSS\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	Electron microscopy	2.6	2020-08-19
72	8BH4\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.62	2023-08-16
73	7Y7D\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	Electron microscopy	2.58	2023-10-25
74	7UG7\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B	Electron microscopy	2.58	2022-05-18
75	6XZB\|1\|A1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.54	2020-11-04
76	7NWT\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	Electron microscopy	2.66	2021-12-15
77	7N30\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	2021-07-14
78	7N31\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	2021-07-14
79	7ZTA\|1\|16S1	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	Electron microscopy	2.7	2023-04-12
80	6TC3\|1\|16S1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	Electron microscopy	2.7	2020-01-01
81	6TBV\|1\|16S1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	Electron microscopy	2.7	2020-01-01
82	8EKC\|1\|a	Small subunit ribosomal RNA	16S Ribosomal RNA	Escherichia coli	Bacteria	RF00177	Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA	Electron microscopy	2.7	2022-12-07
83	8HU1\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state	Electron microscopy	2.69	2024-04-03
84	7N2C\|1\|16	Small subunit ribosomal RNA	16S rRNA, Chains: mR	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	2021-07-14
85	6XZA\|1\|A1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.66	2020-11-04
86	8BHJ\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.81	2023-08-16
87	8CGJ\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Streptomycin bound to the 30S body	Electron microscopy	1.79	2023-07-26
88	7M5D\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)	Electron microscopy	2.8	2022-10-19
89	8G7R\|1\|a	Small subunit ribosomal RNA	16S Ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)	Electron microscopy	2.8	2024-03-06
90	6Y69\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	Electron microscopy	2.86	2020-07-01
91	7O1C\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	Electron microscopy	2.6	2021-09-01
92	8AM9\|1\|B	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00177	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome	Electron microscopy	2.8	2023-03-08
93	8BGH\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.88	2023-08-16
94	7NSO\|1\|a	Small subunit ribosomal RNA	16S rRNA (1540-MER)	Escherichia coli	Bacteria	RF00177	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	Electron microscopy	2.9	2021-07-14
95	7ST2\|1\|3	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	Electron microscopy	2.9	2022-02-23
96	5AFI\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
97	7BOH\|1\|A	Small subunit ribosomal RNA	RNA (1527-MER)	Escherichia coli K-12	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)	Electron microscopy	2.82	2021-12-08
98	7OT5\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-70 cotranslational folding intermediate 1	Electron microscopy	2.9	2022-01-19
99	7OTC\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli BL21(DE3)	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B	Electron microscopy	2.9	2022-05-11
100	7B5K\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	Electron microscopy	2.9	2021-05-26
101	8G7P\|1\|a	Small subunit ribosomal RNA	16S Ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)	Electron microscopy	2.9	2024-03-06
102	8SYL\|1\|a	Small subunit ribosomal RNA	16S Ribosomal RNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs	Electron microscopy	2.9	2023-08-09
103	5NWY\|1\|0	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
104	7OIZ\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	Electron microscopy	2.9	2021-09-15
105	7P3K\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	Electron microscopy	2.9	2021-10-27
106	8IFC\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Arbekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.9	2024-02-14
107	7ST6\|1\|3	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Pre translocation, non-rotated 70S ribosome (Structure I)	Electron microscopy	3	2022-02-23
108	8G2U\|1\|v	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms	Electron microscopy	3	2023-12-06
109	6WD0\|1\|3	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	Electron microscopy	3	2020-07-01
110	7TOS\|1\|16S	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20	Electron microscopy	2.9	2022-05-25
111	6H4N\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
112	6WDE\|1\|3	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	Electron microscopy	3	2020-07-01
113	6ORE\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Release complex 70S	Electron microscopy	2.9	2019-06-19
114	8GHU\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Methyltransferase RmtC bound to the 30S ribosomal subunit	Electron microscopy	3	2023-04-12
115	5WDT\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
116	5WFS\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
117	7O19\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.9	2021-09-01
118	7OIF\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-27 cotranslational folding intermediate 2	Electron microscopy	3	2022-01-19
119	7OII\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-70 cotranslational folding intermediate 2	Electron microscopy	3	2022-01-19
120	8B7Y\|1\|C	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.	Electron microscopy	3	2023-01-25
121	7BOE\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)	Electron microscopy	2.9	2021-12-08
122	8BHN\|1\|2	Small subunit ribosomal RNA	16S rRNA RRSB-RRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.85	2023-08-16
123	5MDV\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
124	7Q4K\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain	Electron microscopy	3	2022-11-16
125	7NAX\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)	Electron microscopy	2.96	2021-12-08
126	6ZTP\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 6	Electron microscopy	3	2020-09-16
127	6ZU1\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 2	Electron microscopy	3	2020-09-16
128	6ZTO\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 1	Electron microscopy	3	2020-09-23
129	8CGU\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Gentamicin bound to the 30S body	Electron microscopy	1.89	2023-07-26
130	8CAI\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Streptomycin and Hygromycin B bound to the 30S body	Electron microscopy	2.08	2023-07-26
131	7NAR\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)	Electron microscopy	3	2021-12-08
132	7OE0\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E. coli pre-30S delta rbfA ribosomal subunit class F	Electron microscopy	2.69	2021-07-14
133	8CEP\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Round2 30S head (no antibiotic)	Electron microscopy	2.04	2023-07-19
134	8EYT\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	30S_delta_ksgA+KsgA complex	Electron microscopy	2.8	2023-09-06
135	8CGR\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Apramycin bound to the 30S body	Electron microscopy	2.12	2023-07-26
136	5IQR\|1\|2	Small subunit ribosomal RNA	SSU rRNA	Escherichia coli	Bacteria	RF00177	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
137	7BOG\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state E (body domain)	Electron microscopy	2.75	2021-07-07
138	7BOD\|1\|A	Small subunit ribosomal RNA	16S rRNA (body domain of 30S subunit)	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (body domain)	Electron microscopy	2.88	2021-07-07
139	7BOF\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state I (body domain)	Electron microscopy	2.92	2021-07-07
140	7BOI\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)	Electron microscopy	2.98	2021-07-07
141	8CF1\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Tetracycline bound to the 30S head	Electron microscopy	1.82	2023-07-26
142	7PJS\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2021-10-20
143	8CGI\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Pentacycline TP038 bound to the 30S head	Electron microscopy	1.89	2023-07-26
144	8CA7\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Omadacycline and spectinomycin bound to the 30S ribosomal subunit head	Electron microscopy	2.06	2023-08-02
145	8CAZ\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	empty 30S head	Electron microscopy	2.11	2023-07-26
146	7OI0\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E.coli delta rbfA pre-30S ribosomal subunit class D	Electron microscopy	2.76	2021-07-14
147	8CF8\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	Eravacycline bound to the 30S head	Electron microscopy	2.2	2023-08-02
148	7AF8\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state E (head domain)	Electron microscopy	2.75	2021-07-07
149	7AF3\|1\|1	Small subunit ribosomal RNA	16S rRNA (head)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (head domain)	Electron microscopy	2.82	2021-07-07
150	7AF5\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state I (head domain)	Electron microscopy	2.96	2021-07-07
151	7AFA\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state F (head domain)	Electron microscopy	2.95	2021-07-07

Release history

Release	3.329	3.330	3.331	3.332
Date	2024-04-03	2024-04-10	2024-04-17	2024-04-24

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	8GHU\|1\|a	Methyltransferase RmtC bound to the 30S ribosomal subunit	ELECTRON MICROSCOPY	3	1531
2	7BOF\|1\|A	Bacterial 30S ribosomal subunit assembly complex state I (body domain)	ELECTRON MICROSCOPY	2.92	1065
3	7NAX\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)	ELECTRON MICROSCOPY	2.96	1518
4	7OE0\|1\|A	E. coli pre-30S delta rbfA ribosomal subunit class F	ELECTRON MICROSCOPY	2.69	1510
5	7OI0\|1\|A	E.coli delta rbfA pre-30S ribosomal subunit class D	ELECTRON MICROSCOPY	2.76	963
6	7N2C\|1\|16	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	1524
7	7OTC\|1\|a	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B	ELECTRON MICROSCOPY	2.9	1523
8	7UG7\|1\|16	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B	ELECTRON MICROSCOPY	2.58	1504
9	7PJS\|1\|a	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	660
10	7NAR\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)	ELECTRON MICROSCOPY	3	1523
11	7BOI\|1\|A	Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)	ELECTRON MICROSCOPY	2.98	1070
12	7BOE\|1\|A	Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)	ELECTRON MICROSCOPY	2.9	1523
13	7BOD\|1\|A	Bacterial 30S ribosomal subunit assembly complex state M (body domain)	ELECTRON MICROSCOPY	2.88	1070
14	7BOH\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)	ELECTRON MICROSCOPY	2.82	1517
15	7BOG\|1\|A	Bacterial 30S ribosomal subunit assembly complex state E (body domain)	ELECTRON MICROSCOPY	2.75	1064
16	8BIM\|1\|2	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	ELECTRON MICROSCOPY	2.04	1534
17	8BIL\|1\|2	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	ELECTRON MICROSCOPY	2.04	1534
18	8BHP\|1\|2	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.37	1534
19	8BGE\|1\|2	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.11	1534
20	8BHL\|1\|2	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.21	1534
21	8BGH\|1\|2	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.88	1534
22	8BHN\|1\|2	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.85	1534
23	8BF7\|1\|2	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	1534
24	8BH4\|1\|2	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.62	1534
25	8BHJ\|1\|2	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.81	1534
26	8G7R\|1\|a	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)	ELECTRON MICROSCOPY	2.8	1517
27	8G7P\|1\|a	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)	ELECTRON MICROSCOPY	2.9	1518
28	8EKC\|1\|a	Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA	ELECTRON MICROSCOPY	2.7	1517
29	7N2V\|1\|16	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	ELECTRON MICROSCOPY	2.54	1524
30	4V9O\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
31	4V9P\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
32	4V9P\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
33	5J7L\|1\|AA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1523
34	5J5B\|1\|AA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1523
35	5J91\|1\|AA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1523
36	4YBB\|1\|AA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1523
37	6I7V\|1\|AA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	1522
38	4U24\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1538
39	4U26\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1538
40	4U25\|1\|AA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1538
41	4U27\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1538
42	4U1V\|1\|AA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1538
43	4U20\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1538
44	4U1U\|1\|AA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1538
45	4V9O\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
46	4V9O\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
47	7N2U\|1\|16	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	1523
48	7N30\|1\|16	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	1515
49	4V9D\|1\|AA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1538
50	4U1U\|1\|CA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1539
51	4U20\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1539
52	4U1V\|1\|CA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1539
53	4U27\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1539
54	4U25\|1\|CA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1539
55	4U26\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1539
56	4U24\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1539
57	6I7V\|1\|BA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	1533
58	4YBB\|1\|BA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1522
59	5J7L\|1\|BA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1522
60	5J91\|1\|BA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1522
61	5J5B\|1\|BA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1522
62	4V9O\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
63	4V9P\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
64	4V9P\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
65	8CGU\|1\|A	Gentamicin bound to the 30S body	ELECTRON MICROSCOPY	1.89	1039
66	8CGR\|1\|A	Apramycin bound to the 30S body	ELECTRON MICROSCOPY	2.12	1052
67	8CEP\|1\|A	Round2 30S head (no antibiotic)	ELECTRON MICROSCOPY	2.04	1038
68	8G2U\|1\|v	Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms	ELECTRON MICROSCOPY	3	1539
69	5IQR\|1\|2	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	1522
70	7SA4\|1\|2	Damaged 70S ribosome with PrfH bound	ELECTRON MICROSCOPY	2.55	1522
71	5MDV\|1\|2	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	1523
72	6ORE\|1\|2	Release complex 70S	ELECTRON MICROSCOPY	2.9	1523
73	5NWY\|1\|0	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	1539
74	7OIF\|1\|2	CspA-27 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	1523
75	7OT5\|1\|2	CspA-70 cotranslational folding intermediate 1	ELECTRON MICROSCOPY	2.9	1523
76	7OII\|1\|2	CspA-70 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	1523
77	7NWT\|1\|2	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	ELECTRON MICROSCOPY	2.66	1523
78	7S1K\|1\|C	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	1540
79	7S1I\|1\|C	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	1540
80	7S1G\|1\|C	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	1540
81	7S1H\|1\|C	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	1540
82	7S1J\|1\|C	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	1540
83	8QOA\|1\|A	Structure of SecM-stalled Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2	1510
84	7N31\|1\|16	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	1522
85	7NSO\|1\|a	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	ELECTRON MICROSCOPY	2.9	1540
86	8B0X\|1\|A	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	1489
87	8FTO\|1\|A	E. coli 70S ribosome with an improved MS2 tag inserted in H98	ELECTRON MICROSCOPY	1.85	1508
88	8AYE\|1\|A	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	1508
89	8AKN\|1\|B	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	1510
90	7ST6\|1\|3	Pre translocation, non-rotated 70S ribosome (Structure I)	ELECTRON MICROSCOPY	3	1539
91	6WD0\|1\|3	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	ELECTRON MICROSCOPY	3	1539
92	7ST2\|1\|3	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	ELECTRON MICROSCOPY	2.9	1539
93	7TOS\|1\|16S	E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20	ELECTRON MICROSCOPY	2.9	1532
94	6Y69\|1\|a	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	ELECTRON MICROSCOPY	2.86	1539
95	6H4N\|1\|a	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	1534
96	6YSS\|1\|a	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	ELECTRON MICROSCOPY	2.6	1529
97	8B7Y\|1\|C	Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.	ELECTRON MICROSCOPY	3	1519
98	7OIZ\|1\|A	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	ELECTRON MICROSCOPY	2.9	1509
99	7P3K\|1\|A	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	ELECTRON MICROSCOPY	2.9	1509
100	6TBV\|1\|16S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	ELECTRON MICROSCOPY	2.7	1523
101	6TC3\|1\|16S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	ELECTRON MICROSCOPY	2.7	1523
102	7O1A\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	1523
103	7O19\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.9	1523
104	7Q4K\|1\|AA	Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain	ELECTRON MICROSCOPY	3	1523
105	7O1C\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.6	1523
106	7ZTA\|1\|16S1	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	ELECTRON MICROSCOPY	2.7	1523
107	7B5K\|1\|a	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	ELECTRON MICROSCOPY	2.9	1522
108	7Y7H\|1\|A	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)	ELECTRON MICROSCOPY	2.51	1509
109	7Y7G\|1\|A	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	ELECTRON MICROSCOPY	2.34	1509
110	7Y7E\|1\|A	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.41	1509
111	7Y7F\|1\|A	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	ELECTRON MICROSCOPY	2.43	1509
112	7Y7C\|1\|A	Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.51	1509
113	7Y7D\|1\|A	Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.58	1509
114	8HU1\|1\|A	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state	ELECTRON MICROSCOPY	2.69	1508
115	8HSP\|1\|A	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	ELECTRON MICROSCOPY	2.32	1508
116	8HTZ\|1\|A	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	ELECTRON MICROSCOPY	2.4	1508
117	8EIU\|1\|A	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	1508
118	8IFB\|1\|A	Dibekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.43	1508
119	8IFC\|1\|A	Arbekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.9	1508
120	8G6W\|1\|A	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	1508
121	7K00\|1\|A	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	1508
122	8EMM\|1\|A	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	1508
123	6ZTO\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 1	ELECTRON MICROSCOPY	3	1522
124	6ZU1\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 2	ELECTRON MICROSCOPY	3	1522
125	6ZTP\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 6	ELECTRON MICROSCOPY	3	1522
126	8AM9\|1\|B	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome	ELECTRON MICROSCOPY	2.8	1508
127	7N1P\|1\|16	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	1531
128	8SYL\|1\|a	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs	ELECTRON MICROSCOPY	2.9	1517
129	6WDE\|1\|3	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	ELECTRON MICROSCOPY	3	1539
130	5AFI\|1\|a	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	1528
131	5WDT\|1\|a	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	1529
132	5WFS\|1\|a	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	1529
133	6XZB\|1\|A1	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.54	1523
134	6XZA\|1\|A1	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.66	1523
135	4WOI\|1\|AA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1538
136	4WOI\|1\|DA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1539
137	4V9D\|1\|BA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1539
138	8QBT\|1\|i	E. coli ApdP-stalled ribosomal complex	ELECTRON MICROSCOPY	2.2	1539
139	7M5D\|1\|2	Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)	ELECTRON MICROSCOPY	2.8	1523
140	8CAI\|1\|A	Streptomycin and Hygromycin B bound to the 30S body	ELECTRON MICROSCOPY	2.08	1105
141	8CGJ\|1\|A	Streptomycin bound to the 30S body	ELECTRON MICROSCOPY	1.79	1122
142	8CF1\|1\|A	Tetracycline bound to the 30S head	ELECTRON MICROSCOPY	1.82	481
143	8CF8\|1\|A	Eravacycline bound to the 30S head	ELECTRON MICROSCOPY	2.2	457
144	8CAZ\|1\|A	empty 30S head	ELECTRON MICROSCOPY	2.11	457
145	8CGI\|1\|A	Pentacycline TP038 bound to the 30S head	ELECTRON MICROSCOPY	1.89	457
146	8CA7\|1\|A	Omadacycline and spectinomycin bound to the 30S ribosomal subunit head	ELECTRON MICROSCOPY	2.06	498
147	7AF3\|1\|1	Bacterial 30S ribosomal subunit assembly complex state M (head domain)	ELECTRON MICROSCOPY	2.82	453
148	7AF8\|1\|1	Bacterial 30S ribosomal subunit assembly complex state E (head domain)	ELECTRON MICROSCOPY	2.75	453
149	7AFA\|1\|1	Bacterial 30S ribosomal subunit assembly complex state F (head domain)	ELECTRON MICROSCOPY	2.95	453
150	7AF5\|1\|1	Bacterial 30S ribosomal subunit assembly complex state I (head domain)	ELECTRON MICROSCOPY	2.96	453
151	8EYT\|1\|A	30S_delta_ksgA+KsgA complex	ELECTRON MICROSCOPY	2.8	1415

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_56726.118 Obsolete

Release history

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