RNA 3D Hub //

Equivalence class NR_3.0_56726.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14V9P|1|FA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
24V9O|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
34U1U|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9515392014-07-30
44V9O|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
55AFI|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF001772.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.915392015-03-11
64U20|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.915382014-07-30
74V9P|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
84U1U|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9515382014-07-30
94U26|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.815382014-07-30
104U24|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.915382014-07-30
114U20|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.915392014-07-30
124U27|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.815382014-07-30
134V9P|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
144U25|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.915382014-07-30
154V9O|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
164U1V|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction315392014-07-30
174V9P|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
184V9D|1|BASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315392014-07-09
194U27|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.815392014-07-30
204U1V|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction315382014-07-30
214V9D|1|AASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315382014-07-09
224U25|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.915392014-07-30
234U26|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.815392014-07-30
244U24|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.915392014-07-30
254V9O|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09

Release history

Release2.14
Date2015-03-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_56726.3NR_all_56726.22.14(24) 4U1U|1|AA, 4U1U|1|CA, 4U1V|1|AA, 4U1V|1|CA, 4U20|1|AA, 4U20|1|CA, 4U24|1|AA, 4U24|1|CA, 4U25|1|AA, 4U25|1|CA, 4U26|1|AA, 4U26|1|CA, 4U27|1|AA, 4U27|1|CA, 4V9D|1|AA, 4V9D|1|BA, 4V9O|1|BA, 4V9O|1|DA, 4V9O|1|FA, 4V9O|1|HA, 4V9P|1|BA, 4V9P|1|DA, 4V9P|1|FA, 4V9P|1|HA(1) 5AFI|1|a(99) 2YKR|1|A, 3DG0|1|A, 3DG2|1|A, 3DG4|1|A, 3DG5|1|A, 3J28|1|N, 3J29|1|N, 3J2A|1|N, 3J2B|1|N, 3J2C|1|N, 3J2D|1|N, 3J2E|1|N, 3J2F|1|N, 3J2G|1|N, 3J2H|1|N, 4A2I|1|A, 4ADV|1|A, 4V47|1|BA, 4V48|1|BA, 4V4H|1|AA, 4V4H|1|CA, 4V4Q|1|AA, 4V4Q|1|CA, 4V4V|1|AA, 4V4W|1|AA, 4V50|1|AA, 4V50|1|CA, 4V52|1|AA, 4V52|1|CA, 4V53|1|AA, 4V53|1|CA, 4V54|1|AA, 4V54|1|CA, 4V55|1|AA, 4V55|1|CA, 4V56|1|AA, 4V56|1|CA, 4V57|1|AA, 4V57|1|CA, 4V5B|1|BA, 4V5B|1|DA, 4V5H|1|AA, 4V5Y|1|AA, 4V5Y|1|CA, 4V64|1|AA, 4V64|1|CA, 4V65|1|A1, 4V66|1|A1, 4V69|1|AA, 4V6C|1|AA, 4V6C|1|CA, 4V6D|1|AA, 4V6D|1|CA, 4V6E|1|AA, 4V6E|1|CA, 4V6K|1|BA, 4V6L|1|AA, 4V6M|1|AA, 4V6N|1|BA, 4V6O|1|AA, 4V6P|1|AA, 4V6Q|1|AA, 4V6R|1|AA, 4V6S|1|BA, 4V6T|1|AA, 4V6V|1|AA, 4V6Y|1|AA, 4V6Z|1|AA, 4V70|1|AA, 4V71|1|AA, 4V72|1|AA, 4V73|1|AA, 4V74|1|AA, 4V75|1|AA, 4V76|1|AA, 4V77|1|AA, 4V78|1|AA, 4V79|1|AA, 4V7A|1|AA, 4V7B|1|AA, 4V7C|1|AA, 4V7D|1|BA, 4V7I|1|BA, 4V7S|1|AA, 4V7S|1|CA, 4V7T|1|AA, 4V7T|1|CA, 4V7U|1|AA, 4V7U|1|CA, 4V7V|1|AA, 4V7V|1|CA, 4V85|1|AA, 4V89|1|AA, 4V9C|1|AA, 4V9C|1|CA, 4WF1|1|AA, 4WF1|1|CA, 4WWW|1|QA, 4WWW|1|XA

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15AFI|1|a2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91539
24V9D|1|BAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
34U1U|1|CACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951539
44U20|1|CACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91539
54U1V|1|CACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31539
64U27|1|CACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81539
74U25|1|CACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91539
84U26|1|CACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81539
94U24|1|CACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91539
104V9D|1|AAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
114V9O|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
124V9O|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
134V9O|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
144V9P|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
154U1U|1|AACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951538
164U20|1|AACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91538
174U1V|1|AACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31538
184U27|1|AACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81538
194U25|1|AACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91538
204U26|1|AACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81538
214U24|1|AACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91538
224V9P|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
234V9O|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
244V9P|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
254V9P|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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