NR_3.0_65795.10

Members (73)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	1FJG\|1\|A (rep)	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN	X-ray diffraction	3	2000-09-25
2	2UUA\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.	X-ray diffraction	2.9	2007-05-15
3	1N32\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin	X-ray diffraction	3	2002-11-29
4	4B3M\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the 30S ribosome in complex with compound 1	X-ray diffraction	2.9	2013-08-07
5	2UUB\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.	X-ray diffraction	2.8	2007-05-15
6	2VQE\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-ray diffraction	2.5	2008-04-29
7	4W2I\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
8	4B3R\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the 30S ribosome in complex with compound 30	X-ray diffraction	3	2013-08-07
9	4W2I\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
10	4V9H\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-ray diffraction	2.86	2014-07-09
11	4Y4O\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
12	2VQF\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-ray diffraction	2.9	2008-04-29
13	4Z8C\|1\|1a	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
14	4B3T\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the 30S ribosome in complex with compound 39	X-ray diffraction	3	2013-08-07
15	4Y4O\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
16	1VY4\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
17	4W2G\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
18	4W2F\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
19	3T1Y\|1\|A	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin	X-ray diffraction	2.8	2012-01-25
20	2UXC\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.	X-ray diffraction	2.9	2007-05-08
21	1VY5\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
22	4W2E\|1\|a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2014-10-01
23	4W2F\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
24	4WPO\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
25	4Z3S\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
26	1VY5\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
27	4W2G\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
28	4WPO\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
29	4Y4P\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
30	1XMQ\|1\|A	Small subunit ribosomal RNA	16s ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center	X-ray diffraction	3	2004-12-14
31	4V8I\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
32	4Z8C\|1\|2a	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
33	4LNT\|1\|QA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
34	4V67\|1\|AA	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
35	4Z3S\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
36	4W2H\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
37	4W2H\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
38	4V8D\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
39	4V67\|1\|CA	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
40	4V8I\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
41	4WQY\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
42	4LNT\|1\|XA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
43	4V9R\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
44	4Y4P\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
45	1VY4\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
46	1VY6\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
47	4WQF\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
48	4V8B\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
49	1VY7\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
50	4WQU\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
51	4V8D\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
52	4V9R\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
53	1VY6\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
54	1VY7\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
55	4V8B\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
56	4WQY\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
57	4WQF\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
58	4V90\|1\|AA	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Thermus thermophilus Ribosome	X-ray diffraction	2.95	2014-07-09
59	4V51\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
60	4WQU\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
61	4V51\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
62	4WSD\|1\|13	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
63	4WSD\|1\|1G	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
64	4V8G\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
65	4V7W\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
66	4V7W\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
67	4V7X\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
68	4V7X\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
69	4V7Y\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
70	4V7Y\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
71	4V8G\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
72	4V7L\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
73	4V7L\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09

Release history

Release	2.27	2.28	2.29	2.30	2.31	2.32	2.33	2.34	2.35	2.36	2.37	2.38	2.39	2.40	2.41	2.42	2.43	2.44
Date	2015-06-12	2015-06-19	2015-06-26	2015-07-03	2015-07-10	2015-07-17	2015-07-24	2015-07-31	2015-08-07	2015-08-14	2015-08-21	2015-08-28	2015-09-04	2015-09-11	2015-09-18	2015-09-25	2015-10-02	2015-10-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_65795.10	NR_all_65795.9	2.27	(71) 1FJG\|1\|A, 1N32\|1\|A, 1VY4\|1\|AA, 1VY4\|1\|CA, 1VY5\|1\|AA, 1VY5\|1\|CA, 1VY6\|1\|AA, 1VY6\|1\|CA, 1VY7\|1\|AA, 1VY7\|1\|CA, 1XMQ\|1\|A, 2UUA\|1\|A, 2UUB\|1\|A, 2UXC\|1\|A, 2VQE\|1\|A, 2VQF\|1\|A, 3T1Y\|1\|A, 4B3M\|1\|A, 4B3R\|1\|A, 4B3T\|1\|A, 4LNT\|1\|QA, 4LNT\|1\|XA, 4V51\|1\|AA, 4V51\|1\|CA, 4V67\|1\|AA, 4V67\|1\|CA, 4V7L\|1\|AA, 4V7L\|1\|CA, 4V7W\|1\|AA, 4V7W\|1\|CA, 4V7X\|1\|AA, 4V7X\|1\|CA, 4V7Y\|1\|AA, 4V7Y\|1\|CA, 4V8B\|1\|AA, 4V8B\|1\|CA, 4V8D\|1\|AA, 4V8D\|1\|CA, 4V8G\|1\|AA, 4V8G\|1\|CA, 4V8I\|1\|AA, 4V8I\|1\|CA, 4V90\|1\|AA, 4V9H\|1\|AA, 4V9R\|1\|AA, 4V9R\|1\|CA, 4W2E\|1\|a, 4W2F\|1\|AA, 4W2F\|1\|CA, 4W2G\|1\|AA, 4W2G\|1\|CA, 4W2H\|1\|AA, 4W2H\|1\|CA, 4W2I\|1\|AA, 4W2I\|1\|CA, 4WPO\|1\|BA, 4WPO\|1\|DA, 4WQF\|1\|BA, 4WQF\|1\|DA, 4WQU\|1\|BA, 4WQU\|1\|DA, 4WQY\|1\|BA, 4WQY\|1\|DA, 4Y4O\|1\|1a, 4Y4O\|1\|2a, 4Y4P\|1\|1a, 4Y4P\|1\|2a, 4Z3S\|1\|1a, 4Z3S\|1\|2a, 4Z8C\|1\|1a, 4Z8C\|1\|2a	(2) 4WSD\|1\|13, 4WSD\|1\|1G	(222) 1FKA\|1\|A, 1HNW\|1\|A, 1HNX\|1\|A, 1HNZ\|1\|A, 1HR0\|1\|A, 1I94\|1\|A, 1I95\|1\|A, 1I96\|1\|A, 1I97\|1\|A, 1IBK\|1\|A, 1IBL\|1\|A, 1IBM\|1\|A, 1J5E\|1\|A, 1JGO\|1\|A, 1JGP\|1\|A, 1JGQ\|1\|A, 1N33\|1\|A, 1N34\|1\|A, 1N36\|1\|A, 1VVJ\|1\|QA, 1VVJ\|1\|XA, 1XMO\|1\|A, 1XNQ\|1\|A, 1XNR\|1\|A, 2E5L\|1\|A, 2F4V\|1\|A, 2HHH\|1\|A, 2UU9\|1\|A, 2UUC\|1\|A, 2UXB\|1\|A, 2UXD\|1\|A, 2ZM6\|1\|A, 3OTO\|1\|A, 3T1H\|1\|A, 4AQY\|1\|A, 4B3S\|1\|A, 4DR1\|1\|A, 4DR2\|1\|A, 4DR3\|1\|A, 4DR4\|1\|A, 4DR5\|1\|A, 4DR6\|1\|A, 4DR7\|1\|A, 4DUY\|1\|A, 4DUZ\|1\|A, 4DV0\|1\|A, 4DV1\|1\|A, 4DV2\|1\|A, 4DV3\|1\|A, 4DV4\|1\|A, 4DV5\|1\|A, 4DV6\|1\|A, 4DV7\|1\|A, 4GKJ\|1\|A, 4GKK\|1\|A, 4JI0\|1\|A, 4JI1\|1\|A, 4JI2\|1\|A, 4JI3\|1\|A, 4JI4\|1\|A, 4JI5\|1\|A, 4JI6\|1\|A, 4JI7\|1\|A, 4JI8\|1\|A, 4JV5\|1\|A, 4JYA\|1\|A, 4K0K\|1\|A, 4KHP\|1\|A, 4KVB\|1\|A, 4L47\|1\|QA, 4L47\|1\|XA, 4L71\|1\|QA, 4L71\|1\|XA, 4LEL\|1\|QA, 4LEL\|1\|XA, 4LF4\|1\|A, 4LF5\|1\|A, 4LF6\|1\|A, 4LF7\|1\|A, 4LF8\|1\|A, 4LF9\|1\|A, 4LFA\|1\|A, 4LFB\|1\|A, 4LFC\|1\|A, 4LFZ\|1\|QA, 4LFZ\|1\|XA, 4LSK\|1\|QA, 4LSK\|1\|XA, 4LT8\|1\|QA, 4LT8\|1\|XA, 4NXM\|1\|A, 4NXN\|1\|A, 4OX9\|1\|A, 4P6F\|1\|QA, 4P6F\|1\|XA, 4P70\|1\|QA, 4P70\|1\|XA, 4TUA\|1\|QA, 4TUA\|1\|XA, 4TUB\|1\|QA, 4TUB\|1\|XA, 4TUC\|1\|QA, 4TUC\|1\|XA, 4TUD\|1\|QA, 4TUD\|1\|XA, 4TUE\|1\|QA, 4TUE\|1\|XA, 4V42\|1\|AA, 4V4I\|1\|y, 4V4J\|1\|y, 4V4P\|1\|BA+4V4P\|1\|B1, 4V4R\|1\|AA, 4V4S\|1\|AA, 4V4T\|1\|AA, 4V4X\|1\|AA, 4V4Y\|1\|AA, 4V4Z\|1\|AA, 4V5A\|1\|AA, 4V5A\|1\|CA, 4V5C\|1\|AA, 4V5C\|1\|CA, 4V5D\|1\|AA, 4V5D\|1\|CA, 4V5E\|1\|AA, 4V5E\|1\|CA, 4V5F\|1\|AA, 4V5F\|1\|CA, 4V5G\|1\|AA, 4V5G\|1\|CA, 4V5J\|1\|AA, 4V5J\|1\|CA, 4V5K\|1\|AA, 4V5K\|1\|CA, 4V5L\|1\|AA, 4V5M\|1\|AA, 4V5N\|1\|AA, 4V5P\|1\|AA, 4V5P\|1\|CA, 4V5Q\|1\|AA, 4V5Q\|1\|CA, 4V5R\|1\|AA, 4V5R\|1\|CA, 4V5S\|1\|AA, 4V5S\|1\|CA, 4V63\|1\|AA, 4V63\|1\|CA, 4V68\|1\|AA, 4V6A\|1\|AA, 4V6A\|1\|CA, 4V6F\|1\|BA, 4V6F\|1\|CA, 4V6G\|1\|AA, 4V6G\|1\|CA, 4V7J\|1\|Aa, 4V7J\|1\|Ba, 4V7K\|1\|Aa, 4V7K\|1\|Ba, 4V7M\|1\|AA, 4V7M\|1\|CA, 4V7P\|1\|AA, 4V7P\|1\|DA, 4V7Z\|1\|AA, 4V7Z\|1\|CA, 4V83\|1\|AA, 4V83\|1\|CA, 4V84\|1\|AA, 4V84\|1\|CA, 4V87\|1\|BA, 4V87\|1\|CA, 4V8A\|1\|CA, 4V8A\|1\|DA, 4V8C\|1\|CA, 4V8C\|1\|DA, 4V8E\|1\|BA, 4V8E\|1\|DA, 4V8F\|1\|BA, 4V8F\|1\|CA, 4V8H\|1\|AA, 4V8H\|1\|CA, 4V8J\|1\|AA, 4V8J\|1\|CA, 4V8N\|1\|AA, 4V8N\|1\|CA, 4V8O\|1\|AA, 4V8Q\|1\|BA, 4V8U\|1\|AA, 4V8U\|1\|CA, 4V8X\|1\|AA, 4V8X\|1\|CA, 4V95\|1\|AA, 4V95\|1\|CA, 4V97\|1\|AA, 4V97\|1\|CA, 4V9A\|1\|AA, 4V9A\|1\|CA, 4V9B\|1\|AA, 4V9B\|1\|CA, 4V9I\|1\|AA, 4V9I\|1\|CA, 4V9J\|1\|AA, 4V9J\|1\|CA, 4V9K\|1\|AA, 4V9K\|1\|CA, 4V9L\|1\|AA, 4V9L\|1\|CA, 4V9M\|1\|AA, 4V9M\|1\|CA, 4V9N\|1\|AA, 4V9N\|1\|CA, 4V9Q\|1\|BA, 4V9Q\|1\|DA, 4V9S\|1\|AA, 4V9S\|1\|CA, 4W29\|1\|AA, 4W29\|1\|CA, 4WT8\|1\|Ab, 4WT8\|1\|Bb, 4XEJ\|1\|A16S, 4XEJ\|1\|B16S, 4YHH\|1\|A, 4ZER\|1\|1a, 4ZER\|1\|2a

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	1XMQ\|1\|A	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center	X-RAY DIFFRACTION	3	1507
2	2UXC\|1\|A	Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.	X-RAY DIFFRACTION	2.9	1513
3	1FJG\|1\|A	STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN	X-RAY DIFFRACTION	3	1507
4	2VQF\|1\|A	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-RAY DIFFRACTION	2.9	1513
5	2VQE\|1\|A	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-RAY DIFFRACTION	2.5	1513
6	2UUA\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.	X-RAY DIFFRACTION	2.9	1512
7	2UUB\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.	X-RAY DIFFRACTION	2.8	1512
8	4B3T\|1\|A	Crystal structure of the 30S ribosome in complex with compound 39	X-RAY DIFFRACTION	3	1512
9	4B3M\|1\|A	Crystal structure of the 30S ribosome in complex with compound 1	X-RAY DIFFRACTION	2.9	1512
10	4B3R\|1\|A	Crystal structure of the 30S ribosome in complex with compound 30	X-RAY DIFFRACTION	3	1512
11	1N32\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin	X-RAY DIFFRACTION	3	1513
12	3T1Y\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin	X-RAY DIFFRACTION	2.8	1513
13	4W2I\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	1503
14	4W2G\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	1503
15	4W2F\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1503
16	4Z3S\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	1491
17	4Y4P\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1491
18	4WPO\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	1503
19	4WQY\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	1501
20	4WQF\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	1501
21	4WQU\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	1501
22	4V9R\|1\|CA	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	1503
23	4Z8C\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	1483
24	1VY6\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	1503
25	1VY5\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	1503
26	1VY4\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	1503
27	4W2H\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	1503
28	1VY7\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	1503
29	4Y4O\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1492
30	4V8I\|1\|CA	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	1491
31	4V8I\|1\|AA	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	1493
32	4Y4O\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1488
33	4Z3S\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	1488
34	4Y4P\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1488
35	4W2F\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1497
36	4W2G\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	1498
37	1VY5\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	1498
38	1VY4\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	1497
39	1VY6\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	1498
40	1VY7\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	1498
41	4W2I\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	1496
42	4W2H\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	1497
43	4V9R\|1\|AA	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	1498
44	4Z8C\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	1477
45	4WPO\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	1497
46	4WQY\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	1495
47	4WQF\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	1495
48	4WQU\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	1495
49	4V8D\|1\|CA	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	1502
50	4V8B\|1\|CA	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	1506
51	4WSD\|1\|1G	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	1498
52	4LNT\|1\|QA	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	1500
53	4LNT\|1\|XA	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	1500
54	4V8B\|1\|AA	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	1506
55	4V8D\|1\|AA	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	1502
56	4WSD\|1\|13	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	1498
57	4V7L\|1\|AA	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1495
58	4V7L\|1\|CA	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1495
59	4V51\|1\|CA	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	1504
60	4V51\|1\|AA	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	1504
61	4V7X\|1\|AA	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	1504
62	4V7Y\|1\|AA	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	1504
63	4V7W\|1\|AA	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	1504
64	4V7W\|1\|CA	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	1504
65	4V7Y\|1\|CA	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	1504
66	4V7X\|1\|CA	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	1504
67	4V8G\|1\|CA	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1501
68	4V67\|1\|CA	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	1504
69	4V67\|1\|AA	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	1504
70	4W2E\|1\|a	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	1496
71	4V9H\|1\|AA	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	1514
72	4V90\|1\|AA	Thermus thermophilus Ribosome	X-RAY DIFFRACTION	2.95	1507
73	4V8G\|1\|AA	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1505

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_65795.10 Obsolete

Release history

Parents

Children