#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11ZCI|1|A+ 1ZCI|1|B (rep)5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- monoclinic formX-ray diffraction1.652006-01-31
21ZCI|1|C+ 1ZCI|1|D5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- monoclinic formX-ray diffraction1.652006-01-31
32FD0|1|A+ 2FD0|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with lividomycinX-ray diffraction1.82006-05-16
42B8S|1|A+ 2B8S|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'Structure of HIV-1(MAL) genomic RNA DISX-ray diffraction2.762005-10-25
52FCZ|1|A+ 2FCZ|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with ribostamycinX-ray diffraction2.012006-05-16
62FCZ|1|C+ 2FCZ|1|DHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with ribostamycinX-ray diffraction2.012006-05-16
72FCY|1|A+ 2FCY|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with NeomycinX-ray diffraction2.22006-05-16
82B8R|1|A+ 2B8R|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Structure oF HIV-1(LAI) genomic RNA DISX-ray diffraction2.62005-10-25
91Y3S|1|A+ 1Y3S|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- MPD formX-ray diffraction2.252005-11-08
102FCX|1|A+ 2FCX|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with neamineX-ray diffraction22006-05-16
111Y3O|1|A+ 1Y3O|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- Mn soakedX-ray diffraction2.72005-11-08
121YXP|1|A+ 1YXP|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- Zn soakedX-ray diffraction2.42006-01-31
131XPE|1|A+ 1XPE|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B genomic RNA Dimerization Initiation SiteX-ray diffraction1.942005-10-18
141XPF|1|A+ 1XPF|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A genomic RNA Dimerization Initiation SiteX-ray diffraction2.32005-10-18
151XP7|1|A+ 1XP7|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype F genomic RNA Dimerization Initiation SiteX-ray diffraction2.52005-10-18

Release history

Release3.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.371
Date2024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11ZCI|1|C+ 1ZCI|1|DHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6522
21ZCI|1|A+ 1ZCI|1|BHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6522
31XP7|1|A+ 1XP7|1|BHIV-1 subtype F genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.523
42B8S|1|A+ 2B8S|1|BStructure of HIV-1(MAL) genomic RNA DISX-RAY DIFFRACTION2.7623
51YXP|1|A+ 1YXP|1|BHIV-1 DIS RNA subtype F- Zn soakedX-RAY DIFFRACTION2.422
61Y3S|1|A+ 1Y3S|1|BHIV-1 DIS RNA subtype F- MPD formX-RAY DIFFRACTION2.2522
71Y3O|1|A+ 1Y3O|1|BHIV-1 DIS RNA subtype F- Mn soakedX-RAY DIFFRACTION2.722
81XPF|1|A+ 1XPF|1|BHIV-1 subtype A genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.323
92B8R|1|A+ 2B8R|1|BStructure oF HIV-1(LAI) genomic RNA DISX-RAY DIFFRACTION2.623
101XPE|1|A+ 1XPE|1|BHIV-1 subtype B genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION1.9423
112FCX|1|A+ 2FCX|1|BHIV-1 DIS kissing-loop in complex with neamineX-RAY DIFFRACTION222
122FCZ|1|C+ 2FCZ|1|DHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0122
132FCY|1|A+ 2FCY|1|BHIV-1 DIS kissing-loop in complex with NeomycinX-RAY DIFFRACTION2.222
142FD0|1|A+ 2FD0|1|BHIV-1 DIS kissing-loop in complex with lividomycinX-RAY DIFFRACTION1.822
152FCZ|1|A+ 2FCZ|1|BHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0122

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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