Equivalence class NR_3.0_88157.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4CS1|1|A (rep) | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3' | Haloarcula marismortui | Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. | X-ray diffraction | 2 | 19 | 2014-11-19 | |||
| 2 | 6Q8U|1|A+ 6Q8U|1|B | RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3') | Haloarcula marismortui | Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein | X-ray diffraction | 1.99 | 42 | 2019-07-03 | |||
| 3 | 4C40|1|A | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3' | Haloarcula marismortui | The molecular recognition of kink turn structure by the L7Ae class of proteins | X-ray diffraction | 2.2 | 19 | 2013-11-06 | |||
| 4 | 5FJ0|1|C | HMKT-7 | Haloarcula marismortui | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-ray diffraction | 2.2 | 19 | 2016-09-28 | |||
| 5 | 5FJ0|1|A+ 5FJ0|1|B | HMKT-7 | Haloarcula marismortui | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-ray diffraction | 2.2 | 38 | 2016-09-28 | |||
| 6 | 7EI9|1|A+ 7EI9|1|B | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 2.7 | 38 | 2022-03-30 | |||
| 7 | 7EFI|1|A | DNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3') | synthetic construct | RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA | X-ray diffraction | 2.9 | 17 | 2022-03-30 | |||
| 8 | 7EFH|1|A | RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | RNA kink-turn motif | X-ray diffraction | 2.7 | 19 | 2022-03-23 | |||
| 9 | 7EIA|1|G+ 7EIA|1|H | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 38 | 2022-03-30 | |||
| 10 | 7EIA|1|A+ 7EIA|1|B | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 38 | 2022-03-30 | |||
| 11 | 7EIA|1|C+ 7EIA|1|D | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 38 | 2022-03-30 | |||
| 12 | 7EIA|1|E+ 7EIA|1|F | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 38 | 2022-03-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_88157.1 | NR_3.0_53984.1 | 3.224 | (1) 7EFH|1|A | (11) 4C40|1|A, 4CS1|1|A, 5FJ0|1|A+5FJ0|1|B, 5FJ0|1|C, 6Q8U|1|A+6Q8U|1|B, 7EFI|1|A, 7EI9|1|A+7EI9|1|B, 7EIA|1|A+7EIA|1|B, 7EIA|1|C+7EIA|1|D, 7EIA|1|E+7EIA|1|F, 7EIA|1|G+7EIA|1|H | (0) |
| NR_3.0_88157.1 | NR_3.0_67355.2 | 3.224 | (3) 4C40|1|A, 4CS1|1|A, 6Q8U|1|A+6Q8U|1|B | (9) 5FJ0|1|A+5FJ0|1|B, 5FJ0|1|C, 7EFH|1|A, 7EFI|1|A, 7EI9|1|A+7EI9|1|B, 7EIA|1|A+7EIA|1|B, 7EIA|1|C+7EIA|1|D, 7EIA|1|E+7EIA|1|F, 7EIA|1|G+7EIA|1|H | (0) |
| NR_3.0_88157.1 | NR_3.0_86832.1 | 3.224 | (2) 5FJ0|1|A+5FJ0|1|B, 5FJ0|1|C | (10) 4C40|1|A, 4CS1|1|A, 6Q8U|1|A+6Q8U|1|B, 7EFH|1|A, 7EFI|1|A, 7EI9|1|A+7EI9|1|B, 7EIA|1|A+7EIA|1|B, 7EIA|1|C+7EIA|1|D, 7EIA|1|E+7EIA|1|F, 7EIA|1|G+7EIA|1|H | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_88157.1 | NR_3.0_88157.2 | 3.226 | (12) 4C40|1|A, 4CS1|1|A, 5FJ0|1|A+5FJ0|1|B, 5FJ0|1|C, 6Q8U|1|A+6Q8U|1|B, 7EFH|1|A, 7EFI|1|A, 7EI9|1|A+7EI9|1|B, 7EIA|1|A+7EIA|1|B, 7EIA|1|C+7EIA|1|D, 7EIA|1|E+7EIA|1|F, 7EIA|1|G+7EIA|1|H | (0) | (1) 7EFG|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7EFH|1|A | RNA kink-turn motif | X-RAY DIFFRACTION | 2.7 | 19 | |
| 2 | 7EI9|1|A+ 7EI9|1|B | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 2.7 | 38 | |
| 3 | 5FJ0|1|C | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-RAY DIFFRACTION | 2.2 | 19 | |
| 4 | 7EIA|1|C+ 7EIA|1|D | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 38 | |
| 5 | 5FJ0|1|A+ 5FJ0|1|B | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-RAY DIFFRACTION | 2.2 | 38 | |
| 6 | 7EIA|1|G+ 7EIA|1|H | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 38 | |
| 7 | 7EIA|1|E+ 7EIA|1|F | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 38 | |
| 8 | 7EIA|1|A+ 7EIA|1|B | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 38 | |
| 9 | 6Q8U|1|A+ 6Q8U|1|B | Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein | X-RAY DIFFRACTION | 1.99 | 42 | |
| 10 | 4C40|1|A | The molecular recognition of kink turn structure by the L7Ae class of proteins | X-RAY DIFFRACTION | 2.2 | 19 | |
| 11 | 4CS1|1|A | Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. | X-RAY DIFFRACTION | 2 | 19 | |
| 12 | 7EFI|1|A | RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA | X-RAY DIFFRACTION | 2.9 | 17 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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