#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18PV7|1|C4 (rep)5S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureElectron microscopy2.122023-11-15
28PV1|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureElectron microscopy2.562023-11-15
38PV2|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1Electron microscopy2.632023-11-15
48PV3|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureElectron microscopy2.82023-11-15
58PV5|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureElectron microscopy2.862023-11-15
68PV4|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureElectron microscopy2.92023-11-15
78PV6|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureElectron microscopy2.942023-11-15

Release history

Release3.3093.3103.311
Date2023-11-152023-11-242023-11-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18PV4|1|C4Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureELECTRON MICROSCOPY2.9119
28PV1|1|C4Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureELECTRON MICROSCOPY2.56119
38PV3|1|C4Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureELECTRON MICROSCOPY2.8119
48PV2|1|C4Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1ELECTRON MICROSCOPY2.63119
58PV7|1|C4Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureELECTRON MICROSCOPY2.12119
68PV5|1|C4Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureELECTRON MICROSCOPY2.86119
78PV6|1|C4Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureELECTRON MICROSCOPY2.94115

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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