Equivalence class NR_3.0_97519.47 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4Y4O|1|2A (rep) | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-ray diffraction | 2.3 | 2015-03-18 |
2 | 4Y4O|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-ray diffraction | 2.3 | 2015-03-18 |
3 | 5HCQ|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
4 | 4V9H|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-ray diffraction | 2.86 | 2014-07-09 |
5 | 5FDU|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2016-01-27 |
6 | 5FDV|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-01-27 |
7 | 5HCQ|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
8 | 4V8I|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of YfiA bound to the 70S ribosome. | X-ray diffraction | 2.7 | 2014-07-09 |
9 | 5FDV|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-01-27 |
10 | 5FDU|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2016-01-27 |
11 | 4WPO|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
12 | 5IBB|1|1H | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
13 | 5IB7|1|1H | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-ray diffraction | 2.99 | 2016-05-25 |
14 | 5E81|1|1H | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 |
15 | 6CAE|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
16 | 4V8I|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of YfiA bound to the 70S ribosome. | X-ray diffraction | 2.7 | 2014-07-09 |
17 | 6CFL|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution | X-ray diffraction | 2.6 | 2018-03-07 |
18 | 5IBB|1|14 | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
19 | 6CFL|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution | X-ray diffraction | 2.6 | 2018-03-07 |
20 | 6CAE|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
21 | 5E81|1|14 | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 |
22 | 5IB7|1|14 | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-ray diffraction | 2.99 | 2016-05-25 |
23 | 5HCR|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
24 | 6CFK|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution | X-ray diffraction | 2.7 | 2018-03-07 |
25 | 4WPO|1|CA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
26 | 4Z8C|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
27 | 5NDK|1|1H | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
28 | 4WSD|1|1H | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
29 | 6CFJ|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
30 | 5W4K|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
31 | 6CFK|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution | X-ray diffraction | 2.7 | 2018-03-07 |
32 | 5HCR|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
33 | 4WQU|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
34 | 5J4B|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
35 | 4V8D|1|BA | Large subunit ribosomal RNA | RNA (2912-MER) | Thermus thermophilus | Bacteria | RF02541 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
36 | 1VY4|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
37 | 6OF1|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-ray diffraction | 2.8 | 2019-04-17 |
38 | 5J4B|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
39 | 4WSD|1|14 | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
40 | 5NDK|1|14 | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
41 | 5J8B|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.6 | 2016-05-25 |
42 | 4V9R|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
43 | 5HD1|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
44 | 5WIS|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
45 | 1VY4|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
46 | 5J4C|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
47 | 4LNT|1|YA | Large subunit ribosomal RNA | 23S rRNA, tRNA acceptor end mimic | Thermus thermophilus | Bacteria | RF02541 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
48 | 4Z8C|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
49 | 4WQF|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
50 | 5J4C|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
51 | 4V9R|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
52 | 4W2G|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
53 | 5HCP|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 |
54 | 4W2H|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
55 | 4V8D|1|DA | Large subunit ribosomal RNA | RNA (2912-MER) | Thermus thermophilus | Bacteria | RF02541 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
56 | 5HD1|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
57 | 5HCP|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 |
58 | 4W2G|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
59 | 4V8G|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of RMF bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
60 | 4V8B|1|BA | Large subunit ribosomal RNA | RNA (2912-MER) | Thermus thermophilus | Bacteria | RF02541 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
61 | 5W4K|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
62 | 6OF1|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-ray diffraction | 2.8 | 2019-04-17 |
63 | 4V8G|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of RMF bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
64 | 6CFJ|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
65 | 4Z3S|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
66 | 4W2H|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
67 | 4Z3S|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
68 | 4W2I|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
69 | 6ND5|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
70 | 4W2I|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
71 | 5HAU|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
72 | 5HAU|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
73 | 4LNT|1|RA | Large subunit ribosomal RNA | 23S rRNA, tRNA acceptor end mimic | Thermus thermophilus | Bacteria | RF02541 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
74 | 5WIS|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
75 | 4W2F|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
76 | 6ND5|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
77 | 4WQU|1|CA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
78 | 4W2F|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
79 | 4WQF|1|CA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
80 | 4V8B|1|DA | Large subunit ribosomal RNA | RNA (2912-MER) | Thermus thermophilus | Bacteria | RF02541 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
81 | 6O97|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-ray diffraction | 2.75 | 2019-04-17 |
82 | 1VY7|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA, Cytidine-Puromycin | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
83 | 4Y4P|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
84 | 4WQY|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
85 | 4Y4P|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
86 | 1VY5|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
87 | 5WIT|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
88 | 1VY7|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA, Cytidine-Puromycin | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
89 | 1VY5|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
90 | 5DOY|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
91 | 5DOY|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
92 | 6O97|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-ray diffraction | 2.75 | 2019-04-17 |
93 | 5WIT|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
94 | 1VY6|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA, Cytidine-Puromycin | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
95 | 6ND6|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
96 | 1VY6|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA, Cytidine-Puromycin | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
97 | 4WQY|1|CA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
98 | 4V90|1|BA | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Thermus thermophilus | Bacteria | RF02541 | Thermus thermophilus Ribosome | X-ray diffraction | 2.95 | 2014-07-09 |
99 | 6ND6|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
100 | 4V51|1|BA | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
101 | 6UO1|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
102 | 4V51|1|DA | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
103 | 5F8K|1|1A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
104 | 6UO1|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
105 | 4W2E|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
106 | 4V7Y|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin. | X-ray diffraction | 3 | 2014-07-09 |
107 | 4V7Y|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin. | X-ray diffraction | 3 | 2014-07-09 |
108 | 5F8K|1|2A | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
109 | 4V7L|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
110 | 4V7X|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus ribosome complexed with erythromycin. | X-ray diffraction | 3 | 2014-07-09 |
111 | 4V7X|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus ribosome complexed with erythromycin. | X-ray diffraction | 3 | 2014-07-09 |
112 | 4V67|1|BA | Large subunit ribosomal RNA | 23S RRNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
113 | 4V7L|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
114 | 4V7W|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus ribosome complexed with chloramphenicol. | X-ray diffraction | 3 | 2014-07-09 |
115 | 4V7W|1|DA | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of the Thermus thermophilus ribosome complexed with chloramphenicol. | X-ray diffraction | 3 | 2014-07-09 |
116 | 4V67|1|DA | Large subunit ribosomal RNA | 23S RRNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
117 | 6GSJ|1|1H | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-ray diffraction | 2.96 | 2018-07-04 |
118 | 6GSJ|1|14 | Large subunit ribosomal RNA | 23S ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-ray diffraction | 2.96 | 2018-07-04 |
Release history
Release | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 |
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 5F8K|1|2A | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2856 | |
2 | 5FDU|1|2A | Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 2857 | |
3 | 5FDV|1|2A | Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2857 | |
4 | 4Y4O|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 2856 | |
5 | 6CFK|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 2856 | |
6 | 6CFL|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2856 | |
7 | 4V8I|1|DA | Crystal structure of YfiA bound to the 70S ribosome. | X-RAY DIFFRACTION | 2.7 | 2798 | |
8 | 4V8I|1|BA | Crystal structure of YfiA bound to the 70S ribosome. | X-RAY DIFFRACTION | 2.7 | 2827 | |
9 | 4V8G|1|BA | Crystal structure of RMF bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 2809 | |
10 | 4V8G|1|DA | Crystal structure of RMF bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 2814 | |
11 | 4Y4O|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 2861 | |
12 | 5FDU|1|1A | Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 2861 | |
13 | 5FDV|1|1A | Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2861 | |
14 | 6CFK|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 2861 | |
15 | 6CFL|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2861 | |
16 | 5F8K|1|1A | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2861 | |
17 | 4Z8C|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 2790 | |
18 | 5HCQ|1|2A | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2790 | |
19 | 5HCR|1|2A | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2790 | |
20 | 5HD1|1|2A | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 2790 | |
21 | 5HCP|1|2A | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 2790 | |
22 | 5HAU|1|2A | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 2868 | |
23 | 4WQU|1|CA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 2868 | |
24 | 4WQY|1|CA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 2848 | |
25 | 4WQF|1|CA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 2848 | |
26 | 4V9R|1|DA | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 2714 | |
27 | 1VY6|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 2800 | |
28 | 1VY5|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 2800 | |
29 | 1VY4|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 2800 | |
30 | 4WPO|1|CA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 2868 | |
31 | 4W2G|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 2800 | |
32 | 4W2F|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 2800 | |
33 | 6CFJ|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 2789 | |
34 | 5W4K|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 2789 | |
35 | 5WIS|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 2789 | |
36 | 4Y4P|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 2789 | |
37 | 5J4B|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2789 | |
38 | 5J4C|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 2789 | |
39 | 5WIT|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2789 | |
40 | 4Z3S|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 2789 | |
41 | 6ND5|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 2789 | |
42 | 6OF1|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 2789 | |
43 | 6CAE|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2789 | |
44 | 6O97|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 2789 | |
45 | 6ND6|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 2789 | |
46 | 6UO1|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-RAY DIFFRACTION | 2.95 | 2789 | |
47 | 5DOY|1|2A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2789 | |
48 | 4W2H|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 2800 | |
49 | 1VY7|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 2800 | |
50 | 4W2I|1|DA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 2800 | |
51 | 1VY7|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 2819 | |
52 | 4W2I|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 2822 | |
53 | 5DOY|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2860 | |
54 | 4Z3S|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 2860 | |
55 | 6ND5|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 2860 | |
56 | 6UO1|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-RAY DIFFRACTION | 2.95 | 2860 | |
57 | 6OF1|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 2860 | |
58 | 6CAE|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2860 | |
59 | 6O97|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 2860 | |
60 | 6ND6|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 2860 | |
61 | 6CFJ|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 2860 | |
62 | 5J4C|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 2860 | |
63 | 5W4K|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 2860 | |
64 | 5WIS|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 2860 | |
65 | 4Y4P|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 2860 | |
66 | 5J4B|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2861 | |
67 | 5WIT|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2860 | |
68 | 4W2F|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 2871 | |
69 | 4W2G|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 2819 | |
70 | 1VY5|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 2819 | |
71 | 1VY4|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 2819 | |
72 | 1VY6|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 2819 | |
73 | 4V9R|1|BA | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 2731 | |
74 | 4W2H|1|BA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 2822 | |
75 | 4WPO|1|AA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 2872 | |
76 | 4WQU|1|AA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 2872 | |
77 | 4Z8C|1|1A | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 2746 | |
78 | 5HCQ|1|1A | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2746 | |
79 | 5HCR|1|1A | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 2746 | |
80 | 5HCP|1|1A | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 2746 | |
81 | 5HD1|1|1A | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 2746 | |
82 | 5HAU|1|1A | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 2872 | |
83 | 4WQY|1|AA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 2852 | |
84 | 4WQF|1|AA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 2852 | |
85 | 4W2E|1|A | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 2873 | |
86 | 4V67|1|DA | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 2879 | |
87 | 4V67|1|BA | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 2879 | |
88 | 5IBB|1|14 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 2810 | |
89 | 5E81|1|14 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 2855 | |
90 | 5IB7|1|14 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-RAY DIFFRACTION | 2.99 | 2826 | |
91 | 6GSJ|1|14 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 2.96 | 2811 | |
92 | 5NDK|1|14 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 2909 | |
93 | 4WSD|1|14 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 2909 | |
94 | 4V8D|1|DA | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 2907 | |
95 | 4V8B|1|DA | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 2907 | |
96 | 4LNT|1|RA | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 2882 | |
97 | 5IB7|1|1H | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-RAY DIFFRACTION | 2.99 | 2860 | |
98 | 5IBB|1|1H | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 2841 | |
99 | 5E81|1|1H | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 2888 | |
100 | 6GSJ|1|1H | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 2.96 | 2850 | |
101 | 5NDK|1|1H | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 2912 | |
102 | 4WSD|1|1H | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 2912 | |
103 | 4V8D|1|BA | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 2912 | |
104 | 4V8B|1|BA | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 2912 | |
105 | 4LNT|1|YA | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 2883 | |
106 | 4V7L|1|BA | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 2800 | |
107 | 4V7L|1|DA | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 2800 | |
108 | 4V51|1|DA | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 2772 | |
109 | 4V51|1|BA | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 2772 | |
110 | 4V7Y|1|BA | Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin. | X-RAY DIFFRACTION | 3 | 2725 | |
111 | 4V7Y|1|DA | Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin. | X-RAY DIFFRACTION | 3 | 2725 | |
112 | 4V7X|1|BA | Structure of the Thermus thermophilus ribosome complexed with erythromycin. | X-RAY DIFFRACTION | 3 | 2725 | |
113 | 4V7X|1|DA | Structure of the Thermus thermophilus ribosome complexed with erythromycin. | X-RAY DIFFRACTION | 3 | 2725 | |
114 | 4V7W|1|BA | Structure of the Thermus thermophilus ribosome complexed with chloramphenicol. | X-RAY DIFFRACTION | 3 | 2725 | |
115 | 4V7W|1|DA | Structure of the Thermus thermophilus ribosome complexed with chloramphenicol. | X-RAY DIFFRACTION | 3 | 2725 | |
116 | 5J8B|1|A | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 2874 | |
117 | 4V9H|1|BA | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-RAY DIFFRACTION | 2.86 | 2859 | |
118 | 4V90|1|BA | Thermus thermophilus Ribosome | X-RAY DIFFRACTION | 2.95 | 2901 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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