Equivalence class NR_3.0_98371.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8DH1|1|G (rep) | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 2 | 8DH1|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 3 | 8DH1|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 4 | 8DH0|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 5 | 8DH0|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 6 | 8DH4|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 7 | 8DH0|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 8 | 8DH4|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 9 | 8DH1|1|N | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 10 | 8DH4|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 11 | 8DH5|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 12 | 8DH5|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 13 | 8DH5|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 14 | 8DH5|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 15 | 8DH4|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 16 | 8DH0|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 17 | 8DH3|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 18 | 8DH2|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 19 | 8DH3|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 20 | 8DH3|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 21 | 8DH3|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 22 | 8DH2|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 23 | 8DH2|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 24 | 8DH2|1|N | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 25 | 1H38|1|F | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 | |||
| 26 | 1H38|1|I | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 | |||
| 27 | 1H38|1|L | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 | |||
| 28 | 1H38|1|O | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 |
Release history
| Release | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 |
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| Date | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_98371.1 | NR_3.0_71520.1 | 3.268 | (4) 1H38|1|F, 1H38|1|I, 1H38|1|L, 1H38|1|O | (24) 8DH0|1|C, 8DH0|1|G, 8DH0|1|K, 8DH0|1|O, 8DH1|1|C, 8DH1|1|G, 8DH1|1|K, 8DH1|1|N, 8DH2|1|C, 8DH2|1|G, 8DH2|1|K, 8DH2|1|N, 8DH3|1|C, 8DH3|1|G, 8DH3|1|K, 8DH3|1|O, 8DH4|1|C, 8DH4|1|G, 8DH4|1|K, 8DH4|1|O, 8DH5|1|C, 8DH5|1|G, 8DH5|1|K, 8DH5|1|O | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8DH2|1|K | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 | |
| 2 | 8DH1|1|N | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 | |
| 3 | 8DH2|1|N | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 | |
| 4 | 8DH5|1|O | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 8 | |
| 5 | 8DH4|1|O | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 8 | |
| 6 | 8DH3|1|O | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 8 | |
| 7 | 8DH3|1|G | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 8 | |
| 8 | 8DH3|1|C | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 9 | |
| 9 | 8DH2|1|C | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 | |
| 10 | 8DH4|1|C | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 9 | |
| 11 | 8DH1|1|C | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 | |
| 12 | 8DH0|1|C | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 | |
| 13 | 8DH5|1|C | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 9 | |
| 14 | 8DH0|1|O | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 | |
| 15 | 8DH0|1|K | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 | |
| 16 | 8DH1|1|K | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 | |
| 17 | 8DH1|1|G | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 | |
| 18 | 8DH2|1|G | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 | |
| 19 | 8DH5|1|G | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 8 | |
| 20 | 8DH4|1|G | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 8 | |
| 21 | 8DH5|1|K | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 8 | |
| 22 | 8DH4|1|K | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 8 | |
| 23 | 8DH3|1|K | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 8 | |
| 24 | 8DH0|1|G | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 | |
| 25 | 1H38|1|F | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 | |
| 26 | 1H38|1|O | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 | |
| 27 | 1H38|1|I | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 | |
| 28 | 1H38|1|L | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: