NR_3.5_03510.30

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V88\|1\|A6 (rep)	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
2	5TBW\|1\|sR	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
3	4V88\|1\|A2	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
4	5TBW\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
5	6HHQ\|1\|sR	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	2019-02-20
6	5OBM\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
7	5I4L\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
8	5MEI\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
9	5LYB\|1\|6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
10	5I4L\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
11	5MEI\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
12	5OBM\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
13	5ON6\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
14	6HHQ\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	2019-02-20
15	5LYB\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
16	5ON6\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
17	5NDV\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
18	5NDV\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
19	5TGM\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
20	5TGM\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
21	5DAT\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
22	5TGA\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
23	5DGE\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
24	5DGV\|1\|6	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288c RDN37-1 miscRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
25	5DGF\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
26	5DC3\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
27	5DAT\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
28	5TGA\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
29	5DGV\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288c RDN37-1 miscRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
30	5DGE\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
31	5DGF\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
32	5DC3\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
33	6T4Q\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	Electron microscopy	2.6	2019-12-25
34	4U4R\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
35	6TB3\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	2020-04-22
36	6SNT\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome stalled on SDD1 mRNA.	Electron microscopy	2.8	2020-03-04
37	4U3U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
38	4U4R\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
39	4U3U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
40	4U3M\|1\|6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
41	4U4Q\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
42	4U4U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
43	4U52\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
44	4U3M\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
45	4U6F\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
46	4U4N\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
47	4U52\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
48	4U4U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
49	4U4Q\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
50	6Q8Y\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	Electron microscopy	3.1	2019-03-13
51	4U4Z\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
52	4U6F\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
53	4U4Y\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
54	4U3N\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
55	6SV4\|1\|2b	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
56	6SV4\|1\|2c	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
57	4U55\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
58	6T7T\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on poly(A) tract.	Electron microscopy	3.1	2019-12-25
59	5M1J\|1\|22	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
60	4U4Z\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
61	4U4N\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
62	4U50\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
63	4U51\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
64	6T7I\|1\|C2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	Electron microscopy	3.2	2019-12-25
65	4U3N\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
66	4U4Y\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
67	4U51\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
68	6TNU\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	Electron microscopy	3.1	2020-04-22
69	4U55\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
70	6S47\|1\|BA	Small subunit ribosomal RNA	18S rRNA (1707-MER)	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	Electron microscopy	3.28	2019-07-24
71	6FAI\|1\|2	Small subunit ribosomal RNA	20S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit	Electron microscopy	3.4	2018-02-28
72	4U53\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
73	5JUP\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
74	4U50\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
75	6RBD\|1\|2	Small subunit ribosomal RNA	20S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles	Electron microscopy	3.47	2019-06-26
76	4U53\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
77	6SV4\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
78	4U56\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
79	4U56\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22

Release history

Release	3.123	3.124	3.125	3.126	3.127	3.128	3.129	3.130	3.131	3.132	3.133	3.134	3.135	3.136
Date	2020-04-22	2020-04-29	2020-05-06	2020-05-13	2020-05-20	2020-05-27	2020-06-03	2020-06-10	2020-06-17	2020-06-24	2020-07-01	2020-07-08	2020-07-15	2020-07-22

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_03510.30	NR_3.5_03510.29	3.123	(77) 4U3M\|1\|2, 4U3M\|1\|6, 4U3N\|1\|2, 4U3N\|1\|6, 4U3U\|1\|2, 4U3U\|1\|6, 4U4N\|1\|2, 4U4N\|1\|6, 4U4Q\|1\|2, 4U4Q\|1\|6, 4U4R\|1\|2, 4U4R\|1\|6, 4U4U\|1\|2, 4U4U\|1\|6, 4U4Y\|1\|2, 4U4Y\|1\|6, 4U4Z\|1\|2, 4U4Z\|1\|6, 4U50\|1\|2, 4U50\|1\|6, 4U51\|1\|2, 4U51\|1\|6, 4U52\|1\|2, 4U52\|1\|6, 4U53\|1\|2, 4U53\|1\|6, 4U55\|1\|2, 4U55\|1\|6, 4U56\|1\|2, 4U56\|1\|6, 4U6F\|1\|2, 4U6F\|1\|6, 4V88\|1\|A2, 4V88\|1\|A6, 5DAT\|1\|2, 5DAT\|1\|6, 5DC3\|1\|2, 5DC3\|1\|6, 5DGE\|1\|2, 5DGE\|1\|6, 5DGF\|1\|2, 5DGF\|1\|6, 5DGV\|1\|2, 5DGV\|1\|6, 5I4L\|1\|2, 5I4L\|1\|6, 5JUP\|1\|A, 5LYB\|1\|2, 5LYB\|1\|6, 5M1J\|1\|22, 5MEI\|1\|6, 5MEI\|1\|A, 5NDV\|1\|2, 5NDV\|1\|6, 5OBM\|1\|2, 5OBM\|1\|6, 5ON6\|1\|6, 5ON6\|1\|A, 5TBW\|1\|A, 5TBW\|1\|sR, 5TGA\|1\|2, 5TGA\|1\|6, 5TGM\|1\|2, 5TGM\|1\|6, 6FAI\|1\|2, 6HHQ\|1\|A, 6HHQ\|1\|sR, 6Q8Y\|1\|2, 6RBD\|1\|2, 6S47\|1\|BA, 6SNT\|1\|2, 6SV4\|1\|2, 6SV4\|1\|2b, 6SV4\|1\|2c, 6T4Q\|1\|C2, 6T7I\|1\|C2, 6T7T\|1\|C2	(2) 6TB3\|1\|2, 6TNU\|1\|2	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_03510.30	NR_3.5_03510.31	3.137	(79) 4U3M\|1\|2, 4U3M\|1\|6, 4U3N\|1\|2, 4U3N\|1\|6, 4U3U\|1\|2, 4U3U\|1\|6, 4U4N\|1\|2, 4U4N\|1\|6, 4U4Q\|1\|2, 4U4Q\|1\|6, 4U4R\|1\|2, 4U4R\|1\|6, 4U4U\|1\|2, 4U4U\|1\|6, 4U4Y\|1\|2, 4U4Y\|1\|6, 4U4Z\|1\|2, 4U4Z\|1\|6, 4U50\|1\|2, 4U50\|1\|6, 4U51\|1\|2, 4U51\|1\|6, 4U52\|1\|2, 4U52\|1\|6, 4U53\|1\|2, 4U53\|1\|6, 4U55\|1\|2, 4U55\|1\|6, 4U56\|1\|2, 4U56\|1\|6, 4U6F\|1\|2, 4U6F\|1\|6, 4V88\|1\|A2, 4V88\|1\|A6, 5DAT\|1\|2, 5DAT\|1\|6, 5DC3\|1\|2, 5DC3\|1\|6, 5DGE\|1\|2, 5DGE\|1\|6, 5DGF\|1\|2, 5DGF\|1\|6, 5DGV\|1\|2, 5DGV\|1\|6, 5I4L\|1\|2, 5I4L\|1\|6, 5JUP\|1\|A, 5LYB\|1\|2, 5LYB\|1\|6, 5M1J\|1\|22, 5MEI\|1\|6, 5MEI\|1\|A, 5NDV\|1\|2, 5NDV\|1\|6, 5OBM\|1\|2, 5OBM\|1\|6, 5ON6\|1\|6, 5ON6\|1\|A, 5TBW\|1\|A, 5TBW\|1\|sR, 5TGA\|1\|2, 5TGA\|1\|6, 5TGM\|1\|2, 5TGM\|1\|6, 6FAI\|1\|2, 6HHQ\|1\|A, 6HHQ\|1\|sR, 6Q8Y\|1\|2, 6RBD\|1\|2, 6S47\|1\|BA, 6SNT\|1\|2, 6SV4\|1\|2, 6SV4\|1\|2b, 6SV4\|1\|2c, 6T4Q\|1\|C2, 6T7I\|1\|C2, 6T7T\|1\|C2, 6TB3\|1\|2, 6TNU\|1\|2	(0)	(2) 6Z6J\|1\|C2, 6Z6K\|1\|C2

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	4U50\|1\|6	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
2	4U53\|1\|6	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1795
3	4U56\|1\|6	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	1795
4	4U52\|1\|6	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
5	5ON6\|1\|6	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	1783
6	5MEI\|1\|6	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	1783
7	6HHQ\|1\|sR	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1783
8	5TBW\|1\|sR	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1783
9	4U4Y\|1\|6	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
10	4U3M\|1\|6	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
11	4U4R\|1\|6	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1795
12	4U3U\|1\|6	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1795
13	4U6F\|1\|6	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
14	4U3N\|1\|6	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
15	4U4Z\|1\|6	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
16	4U55\|1\|6	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
17	4U51\|1\|6	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
18	4U4Q\|1\|6	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
19	4U4U\|1\|6	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
20	4U4N\|1\|6	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
21	5I4L\|1\|6	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
22	4V88\|1\|A6	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1770
23	5TGA\|1\|6	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	1796
24	5LYB\|1\|6	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	1796
25	5TGM\|1\|6	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	1796
26	5DGV\|1\|6	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	1796
27	5DGE\|1\|6	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	1796
28	5DC3\|1\|6	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	1796
29	5DGF\|1\|6	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	1796
30	5DAT\|1\|6	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	1796
31	5OBM\|1\|6	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	1739
32	5NDV\|1\|6	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1683
33	5NDV\|1\|2	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1712
34	5OBM\|1\|2	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	1712
35	5DAT\|1\|2	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	1782
36	5DGF\|1\|2	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	1782
37	5TGM\|1\|2	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	1782
38	5DGV\|1\|2	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	1782
39	5DC3\|1\|2	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	1782
40	5DGE\|1\|2	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	1782
41	5MEI\|1\|A	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	1781
42	5ON6\|1\|A	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	1781
43	6HHQ\|1\|A	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
44	5TBW\|1\|A	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1781
45	4U4Y\|1\|2	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
46	4U3M\|1\|2	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
47	4U4R\|1\|2	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1750
48	4U3U\|1\|2	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1750
49	4U6F\|1\|2	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
50	4V88\|1\|A2	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1768
51	5LYB\|1\|2	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	1782
52	5TGA\|1\|2	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	1782
53	5I4L\|1\|2	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
54	4U4Q\|1\|2	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
55	4U4U\|1\|2	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
56	4U4N\|1\|2	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1750
57	4U3N\|1\|2	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
58	4U4Z\|1\|2	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1750
59	4U50\|1\|2	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
60	4U53\|1\|2	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1750
61	4U51\|1\|2	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
62	4U55\|1\|2	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
63	4U52\|1\|2	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
64	4U56\|1\|2	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	1750
65	5JUP\|1\|A	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	1781
66	6Q8Y\|1\|2	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	ELECTRON MICROSCOPY	3.1	1767
67	6TNU\|1\|2	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	ELECTRON MICROSCOPY	3.1	1771
68	6T7I\|1\|C2	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	ELECTRON MICROSCOPY	3.2	1771
69	6T7T\|1\|C2	Structure of yeast 80S ribosome stalled on poly(A) tract.	ELECTRON MICROSCOPY	3.1	1771
70	6TB3\|1\|2	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	1771
71	6SNT\|1\|2	Yeast 80S ribosome stalled on SDD1 mRNA.	ELECTRON MICROSCOPY	2.8	1771
72	6T4Q\|1\|C2	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	ELECTRON MICROSCOPY	2.6	1771
73	5M1J\|1\|22	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	1781
74	6SV4\|1\|2	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	1758
75	6S47\|1\|BA	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	ELECTRON MICROSCOPY	3.28	1707
76	6SV4\|1\|2b	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	1758
77	6SV4\|1\|2c	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	1758
78	6FAI\|1\|2	Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit	ELECTRON MICROSCOPY	3.4	1775
79	6RBD\|1\|2	State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles	ELECTRON MICROSCOPY	3.47	1777

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_03510.30 Obsolete

Release history

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