Equivalence class NR_3.5_06650.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3J71|1|5+ 3J71|1|8 (rep) | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 2 | 3J72|1|5+ 3J72|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 3 | 5LZS|1|5+ 5LZS|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 4 | 3J74|1|5+ 3J74|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 5 | 5LZV|1|5+ 5LZV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
| 6 | 5LZZ|1|5+ 5LZZ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
| 7 | 3JAH|1|5+ 3JAH|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
| 8 | 1VWW|1|5+ 1VWW|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 9 | 1VWY|1|5+ 1VWY|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 10 | 1VX3|1|5+ 1VX3|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.5 | 2014-06-18 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_06650.4 | NR_3.5_06650.3 | 3.15 | (10) 1VWW|1|5+1VWW|1|8, 1VWY|1|5+1VWY|1|8, 1VX3|1|5+1VX3|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 3J74|1|5+3J74|1|8, 3JAH|1|5+3JAH|1|8, 5LZS|1|5+5LZS|1|8, 5LZV|1|5+5LZV|1|8, 5LZZ|1|5+5LZZ|1|8 | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_06650.4 | NR_3.5_06650.5 | 3.25 | (10) 1VWW|1|5+1VWW|1|8, 1VWY|1|5+1VWY|1|8, 1VX3|1|5+1VX3|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 3J74|1|5+3J74|1|8, 3JAH|1|5+3JAH|1|8, 5LZS|1|5+5LZS|1|8, 5LZV|1|5+5LZV|1|8, 5LZZ|1|5+5LZZ|1|8 | (0) | (2) 6D90|1|5+6D90|1|8, 6D9J|1|5+6D9J|1|8 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3J74|1|5+ 3J74|1|8 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 3662 | |
| 2 | 1VX3|1|5+ 1VX3|1|8 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.5 | 3662 | |
| 3 | 1VWY|1|5+ 1VWY|1|8 | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 3662 | |
| 4 | 3J72|1|5+ 3J72|1|8 | Structure of the idle mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.4 | 3662 | |
| 5 | 1VWW|1|5+ 1VWW|1|8 | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 3662 | |
| 6 | 3J71|1|5+ 3J71|1|8 | Structure of the mammalian 60S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 3662 | |
| 7 | 3JAH|1|5+ 3JAH|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 3662 | |
| 8 | 5LZV|1|5+ 5LZV|1|8 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 3543 | |
| 9 | 5LZS|1|5+ 5LZS|1|8 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 3543 | |
| 10 | 5LZZ|1|5+ 5LZZ|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 3543 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: