Equivalence class NR_3.5_11709.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3ZGZ|1|B (rep) | Transfer RNA | TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-ray diffraction | 2.4 | 2013-01-30 |
| 2 | 4AQ7|1|B | Transfer RNA | E. COLI TRNALEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.5 | 2012-06-13 |
| 3 | 5OMW|1|B | Transfer RNA | L-leucyl-tRNA | Escherichia coli | Bacteria | RF00005 | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.6 | 2017-11-15 |
| 4 | 8POT|1|B | Transfer RNA | tRNA(leu) | Escherichia coli K-12 | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation | X-ray diffraction | 2.149 | 2024-06-12 |
| 5 | 3ZGZ|1|E | Transfer RNA | TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-ray diffraction | 2.4 | 2013-01-30 |
| 6 | 4AS1|1|B | Transfer RNA | TRNA-LEU5 (UAA ISOACEPTOR) | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-ray diffraction | 2.02 | 2012-06-13 |
| 7 | 4ARI|1|B | Transfer RNA | TRNA-LEU5 (UAA ISOACEPTOR) | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-ray diffraction | 2.08 | 2012-06-13 |
| 8 | 4AQ7|1|E | Transfer RNA | E. COLI TRNALEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.5 | 2012-06-13 |
| 9 | 4CQN|1|B | Transfer RNA | ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-ray diffraction | 2.5 | 2014-07-02 |
| 10 | 3ZJT|1|B | Transfer RNA | TRNALEU5 UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation | X-ray diffraction | 2.2 | 2013-04-17 |
| 11 | 5OMW|1|E | Transfer RNA | L-leucyl-tRNA | Escherichia coli | Bacteria | RF00005 | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.6 | 2017-11-15 |
| 12 | 5ON2|1|B | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 13 | 3ZJU|1|B | Transfer RNA | TRNALEU5 UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation | X-ray diffraction | 2.4 | 2013-04-17 |
| 14 | 5ONH|1|B | Transfer RNA | L-leucyl-tRNA(Leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 15 | 5ON2|1|E | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 16 | 5ONH|1|E | Transfer RNA | L-leucyl-tRNA(Leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 17 | 4ARC|1|B | Transfer RNA | TRNA-LEU5 (UAA ISOACCEPTOR) | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucine in the editing conformation | X-ray diffraction | 2 | 2012-06-13 |
| 18 | 5ON3|1|B | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 19 | 4CQN|1|E | Transfer RNA | ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-ray diffraction | 2.5 | 2014-07-02 |
| 20 | 3ZJV|1|B | Transfer RNA | TRNALEU5 UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation | X-ray diffraction | 2.31 | 2013-04-17 |
| 21 | 5ON3|1|E | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 22 | 2NQP|1|F | transfer RNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.5 | 2007-05-15 |
Release history
| Release | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4CQN|1|E | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-RAY DIFFRACTION | 2.5 | 79 | |
| 2 | 5OMW|1|E | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.6 | 77 | |
| 3 | 4AQ7|1|E | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.5 | 77 | |
| 4 | 5ONH|1|E | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 83 | |
| 5 | 5ON2|1|E | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 81 | |
| 6 | 5ON3|1|E | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 79 | |
| 7 | 3ZGZ|1|E | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-RAY DIFFRACTION | 2.4 | 80 | |
| 8 | 3ZGZ|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-RAY DIFFRACTION | 2.4 | 82 | |
| 9 | 5OMW|1|B | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.6 | 83 | |
| 10 | 4AQ7|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.5 | 79 | |
| 11 | 5ON2|1|B | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 85 | |
| 12 | 5ONH|1|B | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 82 | |
| 13 | 5ON3|1|B | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 79 | |
| 14 | 4CQN|1|B | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-RAY DIFFRACTION | 2.5 | 82 | |
| 15 | 2NQP|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.5 | 71 | |
| 16 | 8POT|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation | X-RAY DIFFRACTION | 2.149 | 84 | |
| 17 | 3ZJV|1|B | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation | X-RAY DIFFRACTION | 2.31 | 84 | |
| 18 | 4AS1|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-RAY DIFFRACTION | 2.02 | 82 | |
| 19 | 3ZJU|1|B | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation | X-RAY DIFFRACTION | 2.4 | 79 | |
| 20 | 4ARI|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-RAY DIFFRACTION | 2.08 | 79 | |
| 21 | 3ZJT|1|B | Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation | X-RAY DIFFRACTION | 2.2 | 82 | |
| 22 | 4ARC|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucine in the editing conformation | X-RAY DIFFRACTION | 2 | 71 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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