1 | 4YCO|1|D (rep) | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
2 | 2ZXU|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
3 | 2ZM5|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
4 | 4YCO|1|E | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
5 | 3FOZ|1|C | | tRNA(Phe) | | | | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 |
6 | 3L0U|1|A | Transfer RNA | Unmodified tRNAPhe | Escherichia coli | Bacteria | RF00005 | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-ray diffraction | 3 | 2010-03-16 |
7 | 4YCO|1|F | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
8 | 4V5E|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
9 | 4V9D|1|BV | Transfer RNA | messenger RNA, phenylalanine specific transfer RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
10 | 3FOZ|1|D | | tRNA(Phe) | | | | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 |
11 | 4V5D|1|AV | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
12 | 4V5D|1|CV | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
13 | 4V9C|1|AV | Transfer RNA | Messenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
14 | 4V5Q|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
15 | 4WOI|1|DW | Transfer RNA | Messenger RNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
16 | 4V5S|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
17 | 4V5L|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
18 | 4V5P|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
19 | 4V5P|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
20 | 4Z3S|1|2w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
21 | 2ZM5|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
22 | 4V6F|1|CC | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
23 | 4V5J|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
24 | 4W2F|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
25 | 5AFI|1|y | Transfer RNA | A/T-site Phe-tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
26 | 4V5R|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
27 | 4V5E|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
28 | 4V5Q|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
29 | 4V5R|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
30 | 2ZXU|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
31 | 4V6F|1|BC | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
32 | 4Z3S|1|1w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
33 | 4Y4P|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
34 | 4V5S|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
35 | 4W2E|1|w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
36 | 4V9H|1|AV | Transfer RNA | mRNA, PE hybrid state tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-ray diffraction | 2.86 | 2014-07-09 |
37 | 1VY5|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
38 | 4WQU|1|BW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
39 | 4WQF|1|BW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
40 | 4WQU|1|DW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
41 | 4WQF|1|DW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
42 | 4V5J|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
43 | 4Z3S|1|1y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
44 | 4W2I|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
45 | 1VY4|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
46 | 4W2E|1|x | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
47 | 4Y4P|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
48 | 4W2G|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
49 | 1VY5|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
50 | 4WPO|1|DW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
51 | 4Y4P|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
52 | 4V6F|1|CB | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
53 | 1VY4|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
54 | 4V9D|1|AV | Transfer RNA | messenger RNA, phenylalanine specific transfer RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
55 | 4W2G|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
56 | 4W2F|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
57 | 4WQU|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
58 | 4WPO|1|BY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
59 | 4WQF|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
60 | 1VY4|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
61 | 4W2G|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
62 | 4V6F|1|BB | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
63 | 4V6F|1|BD | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
64 | 4V6F|1|CD | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
65 | 4Z3S|1|2y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
66 | 4W2F|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
67 | 1VY4|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
68 | 4W2G|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
69 | 4V51|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
70 | 4Y4P|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
71 | 4W2I|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
72 | 1VY5|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
73 | 4W2I|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
74 | 4V9I|1|AW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
75 | 4V5D|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
76 | 4V5C|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
77 | 4WPO|1|BW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
78 | 4W2I|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
79 | 4WQU|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
80 | 4WPO|1|DY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
81 | 4WQF|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
82 | 4W2F|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
83 | 4V5D|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
84 | 4V51|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
85 | 1VY5|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
86 | 4WT1|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
87 | 4V5C|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
88 | 4WSD|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
89 | 4V5Q|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
90 | 4V5E|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
91 | 4WSD|1|1L | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
92 | 4WSD|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
93 | 4WT1|1|1K | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
94 | 4WT1|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
95 | 4V5P|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
96 | 4V5R|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
97 | 4V5P|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
98 | 4V9I|1|CW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
99 | 4WRO|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
100 | 4V5D|1|AY | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
101 | 4V5J|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
102 | 4V5D|1|CY | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
103 | 4V5L|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
104 | 4V9C|1|CV | Transfer RNA | Messenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
105 | 4WQR|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
106 | 4WQR|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
107 | 4V5S|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
108 | 4WOI|1|AX | Transfer RNA | Messenger RNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
109 | 4V5R|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
110 | 4WQR|1|1K | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
111 | 4V5C|1|CY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
112 | 4WSD|1|1K | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
113 | 4WRO|1|1K | Transfer RNA | RNA (30-MER), tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
114 | 4WRO|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
115 | 4WRO|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
116 | 4V5J|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
117 | 4WZO|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
118 | 4V5Q|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
119 | 4WQR|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
120 | 4WZO|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
121 | 4W2H|1|AY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
122 | 4WT1|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
123 | 4V5E|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
124 | 4V5C|1|AY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
125 | 4V5S|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
126 | 1VY7|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
127 | 1VY7|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
128 | 4W2H|1|CY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |