Equivalence class NR_3.5_21736.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OQ9|1|z (rep) | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 2 | 4NIA|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 3 | 4OQ9|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 4 | 4NIA|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 5 | 4OQ9|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 6 | 4NIA|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 7 | 4OQ9|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 8 | 4NIA|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 9 | 4OQ9|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 10 | 4NIA|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 11 | 4OQ9|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 12 | 4NIA|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 13 | 4OQ9|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 14 | 4NIA|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 15 | 4OQ9|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 16 | 4NIA|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 17 | 4OQ9|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 18 | 3ER9|1|D | 5'-R(UP*U)-3' | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-ray diffraction | 2.06 | 2009-06-16 | ||||
| 19 | 4OQ8|1|D | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 20 | 2VRT|1|E | 5'-R(*UP*UP)-3' | Escherichia coli | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | |||
| 21 | 1DDL|1|E | RNA (5'-R(P*UP*U)-3') | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-ray diffraction | 2.7 | 2000-10-30 | ||||
| 22 | 2VRT|1|F | 5'-R(*UP*UP)-3' | Escherichia coli | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | |||
| 23 | 5KAL|1|Y | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-ray diffraction | 2.75 | 2016-10-26 | |||
| 24 | 5KAL|1|Z | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-ray diffraction | 2.75 | 2016-10-26 | |||
| 25 | 4NIA|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 26 | 4OQ9|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 27 | 4NIA|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 28 | 4OQ9|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 29 | 4NIA|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 30 | 4OQ9|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 31 | 4NIA|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 32 | 4OQ9|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 33 | 4NIA|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 34 | 4OQ9|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 35 | 4NIA|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 36 | 4OQ9|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 37 | 4NIA|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 |
Release history
| Release | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_21736.3 | NR_3.5_21736.2 | 2.99 | (35) 1DDL|1|E, 2VRT|1|E, 2VRT|1|F, 3ER9|1|D, 4NIA|1|1, 4NIA|1|2, 4NIA|1|3, 4NIA|1|4, 4NIA|1|5, 4NIA|1|6, 4NIA|1|7, 4NIA|1|8, 4NIA|1|t, 4NIA|1|u, 4NIA|1|v, 4NIA|1|w, 4NIA|1|x, 4NIA|1|y, 4NIA|1|z, 4OQ8|1|D, 4OQ9|1|1, 4OQ9|1|2, 4OQ9|1|3, 4OQ9|1|4, 4OQ9|1|5, 4OQ9|1|6, 4OQ9|1|7, 4OQ9|1|8, 4OQ9|1|t, 4OQ9|1|u, 4OQ9|1|v, 4OQ9|1|w, 4OQ9|1|x, 4OQ9|1|y, 4OQ9|1|z | (2) 5KAL|1|Y, 5KAL|1|Z | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_21736.3 | NR_3.5_21736.4 | 2.149 | (37) 1DDL|1|E, 2VRT|1|E, 2VRT|1|F, 3ER9|1|D, 4NIA|1|1, 4NIA|1|2, 4NIA|1|3, 4NIA|1|4, 4NIA|1|5, 4NIA|1|6, 4NIA|1|7, 4NIA|1|8, 4NIA|1|t, 4NIA|1|u, 4NIA|1|v, 4NIA|1|w, 4NIA|1|x, 4NIA|1|y, 4NIA|1|z, 4OQ8|1|D, 4OQ9|1|1, 4OQ9|1|2, 4OQ9|1|3, 4OQ9|1|4, 4OQ9|1|5, 4OQ9|1|6, 4OQ9|1|7, 4OQ9|1|8, 4OQ9|1|t, 4OQ9|1|u, 4OQ9|1|v, 4OQ9|1|w, 4OQ9|1|x, 4OQ9|1|y, 4OQ9|1|z, 5KAL|1|Y, 5KAL|1|Z | (0) | (1) 5NEW|1|C |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 1DDL|1|E | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 2 | |
| 2 | 4NIA|1|7 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 3 | 4NIA|1|8 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 4 | 4NIA|1|y | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 5 | 4OQ9|1|8 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 6 | 4NIA|1|u | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 7 | 4OQ9|1|7 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 8 | 4OQ9|1|y | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 9 | 4OQ9|1|z | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 10 | 4OQ9|1|4 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 11 | 4NIA|1|z | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 12 | 4NIA|1|4 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 13 | 4NIA|1|1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 14 | 4OQ9|1|5 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 15 | 4OQ9|1|1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 16 | 2VRT|1|E | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 | |
| 17 | 2VRT|1|F | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 | |
| 18 | 4NIA|1|6 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 19 | 4NIA|1|5 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 20 | 4OQ9|1|u | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 21 | 3ER9|1|D | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-RAY DIFFRACTION | 2.06 | 2 | |
| 22 | 4OQ9|1|6 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 23 | 4NIA|1|2 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 24 | 4OQ9|1|t | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 25 | 4NIA|1|3 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 26 | 4NIA|1|t | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 27 | 4OQ9|1|2 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 28 | 5KAL|1|Z | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 | |
| 29 | 4NIA|1|v | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 30 | 4NIA|1|x | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | |
| 31 | 4OQ9|1|w | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 32 | 4OQ9|1|v | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 33 | 5KAL|1|Y | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 | |
| 34 | 4OQ9|1|3 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 35 | 4OQ8|1|D | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 36 | 4OQ9|1|x | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | |
| 37 | 4NIA|1|w | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: