Equivalence class NR_3.5_29090.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4J7L|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-ray diffraction | 1.8 | 2013-03-27 | |||
| 2 | 5W0M|1|J | U5 single-stranded RNA | synthetic construct | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | |||
| 3 | 5BUD|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | |||
| 4 | 5W0M|1|I | U5 single-stranded RNA | synthetic construct | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | |||
| 5 | 5W0M|1|H | U5 single-stranded RNA | synthetic construct | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | |||
| 6 | 4J7M|1|B | RNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3') | synthetic construct | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-ray diffraction | 1.7 | 2013-03-27 | |||
| 7 | 5BUD|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | |||
| 8 | 6A4E|1|B | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 | |||
| 9 | 6A4E|1|D | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 |
Release history
| Release | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_29090.1 | NR_3.5_02412.1 | 3.65 | (1) 4J7M|1|B | (8) 4J7L|1|B, 5BUD|1|D, 5BUD|1|E, 5W0M|1|H, 5W0M|1|I, 5W0M|1|J, 6A4E|1|B, 6A4E|1|D | (0) |
| NR_3.5_29090.1 | NR_3.5_51248.1 | 3.65 | (1) 5BUD|1|D | (8) 4J7L|1|B, 4J7M|1|B, 5BUD|1|E, 5W0M|1|H, 5W0M|1|I, 5W0M|1|J, 6A4E|1|B, 6A4E|1|D | (0) |
| NR_3.5_29090.1 | NR_3.5_91461.1 | 3.65 | (1) 5BUD|1|E | (8) 4J7L|1|B, 4J7M|1|B, 5BUD|1|D, 5W0M|1|H, 5W0M|1|I, 5W0M|1|J, 6A4E|1|B, 6A4E|1|D | (0) |
| NR_3.5_29090.1 | NR_3.5_94888.1 | 3.65 | (1) 4J7L|1|B | (8) 4J7M|1|B, 5BUD|1|D, 5BUD|1|E, 5W0M|1|H, 5W0M|1|I, 5W0M|1|J, 6A4E|1|B, 6A4E|1|D | (0) |
| NR_3.5_29090.1 | NR_3.5_97573.1 | 3.65 | (3) 5W0M|1|H, 5W0M|1|I, 5W0M|1|J | (6) 4J7L|1|B, 4J7M|1|B, 5BUD|1|D, 5BUD|1|E, 6A4E|1|B, 6A4E|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_29090.1 | NR_3.5_17996.1 | 3.86 | (9) 4J7L|1|B, 4J7M|1|B, 5BUD|1|D, 5BUD|1|E, 5W0M|1|H, 5W0M|1|I, 5W0M|1|J, 6A4E|1|B, 6A4E|1|D | (0) | (35) 6HXX|1|Aa, 6HXX|1|Ab, 6HXX|1|Ac, 6HXX|1|Ad, 6HXX|1|Ae, 6HXX|1|Af, 6HXX|1|Ag, 6HXX|1|Ah, 6HXX|1|Ai, 6HXX|1|Aj, 6HXX|1|Ak, 6HXX|1|Al, 6HXX|1|Am, 6HXX|1|An, 6HXX|1|Ao, 6HXX|1|Ap, 6HXX|1|Aq, 6HXX|1|Ar, 6HXX|1|As, 6HXX|1|At, 6HXX|1|Au, 6HXX|1|Av, 6HXX|1|Aw, 6HXX|1|Ax, 6HXX|1|Ay, 6HXX|1|Az, 6HXX|1|Ba, 6HXX|1|Bb, 6HXX|1|Bc, 6HXX|1|Bd, 6HXX|1|Be, 6HXX|1|Bf, 6HXX|1|Bg, 6HXX|1|Bh, 6HXX|1|Bi |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5W0M|1|H | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 | |
| 2 | 5W0M|1|I | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 | |
| 3 | 5W0M|1|J | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 | |
| 4 | 5BUD|1|D | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 4 | |
| 5 | 5BUD|1|E | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 5 | |
| 6 | 4J7L|1|B | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-RAY DIFFRACTION | 1.8 | 5 | |
| 7 | 4J7M|1|B | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-RAY DIFFRACTION | 1.7 | 3 | |
| 8 | 6A4E|1|D | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 | |
| 9 | 6A4E|1|B | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: