#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13S17|1|R (rep)RNA (5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*G)-3')RNA Polymerase II Initiation Complex with a 9-nt RNAX-ray diffraction3.22011-08-10
22E2J|1|R5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3'synthetic constructRNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPPX-ray diffraction3.52006-12-12
36O6C|1|KRNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3')Saccharomyces cerevisiaeRNA polymerase II elongation complex arrested at a CPD lesionElectron microscopy3.12019-06-26

Release history

Release3.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.129
Date2019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_31327.2NR_3.5_31327.13.80(2) 2E2J|1|R, 3S17|1|R(1) 6O6C|1|K(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_31327.2NR_3.5_33912.13.130(3) 2E2J|1|R, 3S17|1|R, 6O6C|1|K(0) (3) 6UPX|1|R, 6UPY|1|R, 6UQ2|1|R

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16O6C|1|KRNA polymerase II elongation complex arrested at a CPD lesionELECTRON MICROSCOPY3.19
23S17|1|RRNA Polymerase II Initiation Complex with a 9-nt RNAX-RAY DIFFRACTION3.29
32E2J|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPPX-RAY DIFFRACTION3.59

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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