Equivalence class NR_3.5_35542.12 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V9R|1|AX (rep) | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
| 2 | 4V9S|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 3 | 4V9R|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
| 4 | 4V9S|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 5 | 4V7M|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 6 | 4V67|1|AY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 7 | 4V63|1|AY | Transfer RNA | mRNA, P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 8 | 4V87|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 9 | 4V8F|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 10 | 4V9I|1|CV | Transfer RNA | mRNA, P-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 11 | 4V6A|1|CW | Transfer RNA | RNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of EF-P bound to the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 12 | 4V63|1|CY | Transfer RNA | mRNA, P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 13 | 4V67|1|CY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 14 | 4V8C|1|DC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 15 | 4YZV|1|QV | Transfer RNA | messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-ray diffraction | 3.1 | 2015-10-21 |
| 16 | 4Z3S|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 17 | 5DOY|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 18 | 4V8B|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 19 | 4V67|1|AZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 20 | 4V63|1|AZ | Transfer RNA | P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 21 | 4V8E|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 |
| 22 | 4V8Q|1|BV | Transfer RNA | E-SITE or P-SITE TRNA FMET, MRNA | Escherichia coli | Bacteria | RF00005 | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 23 | 4V8B|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 24 | 4V6G|1|CC | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 25 | 4V8C|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 26 | 4V63|1|CZ | Transfer RNA | P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 27 | 4V67|1|CZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 28 | 4V8E|1|DC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 |
| 29 | 4LT8|1|QV | Transfer RNA | A-site ASL Pro, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.14 | 2014-08-06 |
| 30 | 4W4G|1|XV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
| 31 | 4LT8|1|XV | Transfer RNA | A-site ASL Pro, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.14 | 2014-08-06 |
| 32 | 4LNT|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
| 33 | 4YZV|1|XV | Transfer RNA | messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-ray diffraction | 3.1 | 2015-10-21 |
| 34 | 4Y4P|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 35 | 4WRO|1|2K | Transfer RNA | RNA (30-MER), tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 36 | 4Z8C|1|2x | Transfer RNA | Initiator Methionine tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
| 37 | 4Y4P|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 38 | 3CW5|1|A | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | E. coli Initiator tRNA | X-ray diffraction | 3.1 | 2008-09-02 |
| 39 | 4W2G|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 40 | 4W2F|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 41 | 4W2H|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 42 | 4W2I|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 43 | 1VY5|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 44 | 1VY5|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 45 | 4W2F|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 46 | 4W2I|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 47 | 4W2G|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 48 | 4V5C|1|AV | Transfer RNA | MRNA, P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 49 | 5DOY|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 50 | 4Z3S|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 51 | 1VY7|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 52 | 1VY6|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
| 53 | 1VY4|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 54 | 1VY6|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
| 55 | 4WPO|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 56 | 4V8D|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
| 57 | 4V9I|1|AV | Transfer RNA | mRNA, P-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 58 | 4V6A|1|AW | Transfer RNA | RNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of EF-P bound to the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 59 | 4V87|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 60 | 4V7M|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), RNA (77-MER) | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 61 | 4LNT|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
| 62 | 4YPB|1|QV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
| 63 | 4YPB|1|XV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
| 64 | 4Z8C|1|1x | Transfer RNA | Initiator Methionine tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
| 65 | 4ZER|1|1x | Transfer RNA | mRNA, tRNA met | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3.1 | 2015-05-20 |
| 66 | 4WQR|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
| 67 | 4WSD|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 68 | 4WT1|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 69 | 4ZER|1|2x | Transfer RNA | mRNA, tRNA met | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3.1 | 2015-05-20 |
| 70 | 3CW6|1|A | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | E. coli Initiator tRNA | X-ray diffraction | 3.3 | 2008-09-02 |
| 71 | 4WQY|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
| 72 | 4V8D|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
| 73 | 1VVJ|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.44 | 2014-08-06 |
| 74 | 4W4G|1|QV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
| 75 | 4LSK|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.48 | 2014-08-06 |
| 76 | 1VVJ|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.44 | 2014-08-06 |
| 77 | 4LSK|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.48 | 2014-08-06 |
| 78 | 4WR6|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
| 79 | 4WPO|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 80 | 4V6G|1|CB | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 81 | 4WQ1|1|2K | Transfer RNA | mRNA, tRNA-fMET | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.1 | 2015-06-10 |
| 82 | 4WQ1|1|2L | Transfer RNA | mRNA, tRNA-fMET | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.1 | 2015-06-10 |
| 83 | 4WSD|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 84 | 4W2H|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 85 | 4WQY|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
| 86 | 4V51|1|AV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 87 | 4V51|1|CV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 88 | 4WRA|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 3.05 | 2015-06-10 |
| 89 | 4WZO|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
| 90 | 4V6G|1|AC | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 91 | 4V5K|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 92 | 4V7L|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 93 | 1VY7|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 94 | 1VY4|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 95 | 4WZO|1|1K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
| 96 | 4WZO|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
| 97 | 2FMT|1|C | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
| 98 | 2FMT|1|D | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
| 99 | 4V5C|1|CV | Transfer RNA | MRNA, P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 100 | 4WRA|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 3.05 | 2015-06-10 |
| 101 | 5AFI|1|v | Transfer RNA | mRNA, P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 102 | 4V8F|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 103 | 4V6G|1|CD | Transfer RNA | TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 104 | 4WRO|1|2L | Transfer RNA | RNA (30-MER), tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 105 | 4V5K|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 106 | 4WT1|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 107 | 4WQR|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
| 108 | 4YPB|1|QW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
| 109 | 4W4G|1|QW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
| 110 | 4W4G|1|XW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
| 111 | 4YPB|1|XW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
| 112 | 4WR6|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
| 113 | 4V6G|1|AD | Transfer RNA | TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 114 | 4V7L|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 115 | 4V8Q|1|BW | Transfer RNA | E-SITE or P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 116 | 4V8C|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 117 | 4V8B|1|AD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 118 | 4V87|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 119 | 4V8C|1|DD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 120 | 4V87|1|BD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 121 | 4V8B|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 122 | 5AFI|1|w | Transfer RNA | P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 123 | 3QSY|1|D | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea | X-ray diffraction | 3.2 | 2012-03-21 |
| 124 | 4V5K|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 125 | 4V5K|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
Parents
Children
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4WRA|1|2L | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 3.05 | 73 | |
| 2 | 4WR6|1|2L | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 72 | |
| 3 | 4WQ1|1|2L | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.1 | 72 | |
| 4 | 4WZO|1|2L | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 73 | |
| 5 | 4WSD|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
| 6 | 4WT1|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
| 7 | 4WRO|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
| 8 | 4WQR|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 72 | |
| 9 | 4V8E|1|DC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 10 | 4V8E|1|BC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 11 | 4V8F|1|BC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 12 | 4V8D|1|AC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 13 | 4WQ1|1|2K | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.1 | 72 | |
| 14 | 4WRO|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
| 15 | 4V8F|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 16 | 4V8D|1|CC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 17 | 4WSD|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
| 18 | 4WR6|1|2K | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 71 | |
| 19 | 4WQR|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 72 | |
| 20 | 4WT1|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
| 21 | 4WRA|1|2K | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 3.05 | 73 | |
| 22 | 4WZO|1|2K | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 72 | |
| 23 | 4V8B|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 24 | 4V87|1|CC | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 25 | 4V8C|1|DC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 26 | 4V8C|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 27 | 4V87|1|BC | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 28 | 4V8B|1|AC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 29 | 4V6G|1|CC | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 30 | 4ZER|1|1x | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3.1 | 72 | |
| 31 | 4Z8C|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 72 | |
| 32 | 4Z8C|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 72 | |
| 33 | 5DOY|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
| 34 | 4W2I|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
| 35 | 4Z3S|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 71 | |
| 36 | 4V9S|1|AX | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 37 | 4V9R|1|AX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
| 38 | 4W2G|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
| 39 | 1VY5|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
| 40 | 1VY4|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
| 41 | 1VY6|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
| 42 | 1VY7|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
| 43 | 4W2F|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
| 44 | 4Y4P|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
| 45 | 4WPO|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
| 46 | 4WQY|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
| 47 | 4W2H|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
| 48 | 4ZER|1|2x | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3.1 | 72 | |
| 49 | 4V5K|1|AV | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 50 | 5AFI|1|v | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 51 | 4V5C|1|CV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
| 52 | 4V5K|1|CV | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 53 | 4V6A|1|CW | Structure of EF-P bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 54 | 4V6A|1|AW | Structure of EF-P bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 55 | 4V8Q|1|BV | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 77 | |
| 56 | 4YPB|1|QV | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
| 57 | 4YZV|1|QV | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-RAY DIFFRACTION | 3.1 | 77 | |
| 58 | 4W4G|1|QV | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 59 | 4YPB|1|XV | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
| 60 | 4YZV|1|XV | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-RAY DIFFRACTION | 3.1 | 77 | |
| 61 | 4W4G|1|XV | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 62 | 4V67|1|CY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 63 | 4V67|1|AY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 64 | 4LT8|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.14 | 77 | |
| 65 | 1VVJ|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.44 | 77 | |
| 66 | 4LSK|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.48 | 77 | |
| 67 | 4LSK|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.48 | 77 | |
| 68 | 1VVJ|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.44 | 77 | |
| 69 | 4LT8|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.14 | 77 | |
| 70 | 4LNT|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
| 71 | 4LNT|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
| 72 | 4V7L|1|CX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
| 73 | 4V7L|1|AX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
| 74 | 4V7M|1|AX | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 77 | |
| 75 | 4V7M|1|CX | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 77 | |
| 76 | 4V5C|1|AV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
| 77 | 4V9I|1|CV | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 78 | 4V51|1|AV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 79 | 4V51|1|CV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 80 | 4V9I|1|AV | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 81 | 1VY7|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
| 82 | 4WQY|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
| 83 | 4WPO|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
| 84 | 1VY4|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
| 85 | 1VY5|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
| 86 | 1VY6|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
| 87 | 4Y4P|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
| 88 | 4W2F|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
| 89 | 4W2G|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
| 90 | 4W2I|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
| 91 | 5DOY|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
| 92 | 4Z3S|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 71 | |
| 93 | 4V9R|1|CX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
| 94 | 4V9S|1|CX | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 95 | 4W2H|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
| 96 | 4V63|1|AY | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 97 | 4V63|1|CY | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 98 | 4V6G|1|AC | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 99 | 4WZO|1|1K | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 68 | |
| 100 | 4V6G|1|CB | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 65 | |
| 101 | 5AFI|1|w | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 102 | 4V5K|1|CW | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 103 | 4V5K|1|AW | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 104 | 4V87|1|CD | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 105 | 4V8B|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 106 | 4V8C|1|DD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 107 | 4V8C|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 108 | 4V8B|1|AD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 109 | 4V87|1|BD | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 110 | 4V6G|1|CD | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 111 | 4W4G|1|XW | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 112 | 4YPB|1|XW | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
| 113 | 4W4G|1|QW | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 114 | 4YPB|1|QW | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
| 115 | 4V67|1|AZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 116 | 4V67|1|CZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 117 | 4V63|1|AZ | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 118 | 4V63|1|CZ | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 119 | 4V8Q|1|BW | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 77 | |
| 120 | 4V6G|1|AD | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 121 | 3CW6|1|A | E. coli Initiator tRNA | X-RAY DIFFRACTION | 3.3 | 72 | |
| 122 | 3CW5|1|A | E. coli Initiator tRNA | X-RAY DIFFRACTION | 3.1 | 72 | |
| 123 | 2FMT|1|D | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
| 124 | 2FMT|1|C | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
| 125 | 3QSY|1|D | Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea | X-RAY DIFFRACTION | 3.2 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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