#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V9R|1|AX (rep)Transfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-ray diffraction32014-07-09
24V9S|1|AXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antibiotic GE82832 bound to 70S ribosomeX-ray diffraction3.12014-07-09
34V9S|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antibiotic GE82832 bound to 70S ribosomeX-ray diffraction3.12014-07-09
44V9R|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-ray diffraction32014-07-09
53JCE|1|8mRNA, tRNAsynthetic constructStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
64V7M|1|AXTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-MetEscherichia coliBacteriaRF00005The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
74V63|1|AYTransfer RNAmRNA, P and E-site tRNA(fMet)Escherichia coliBacteriaRF00005Structural basis for translation termination on the 70S ribosome.X-ray diffraction3.212014-07-09
84V67|1|AYTransfer RNAMRNA, P AND E-SITE TRNA(FMET)Escherichia coliBacteriaRF00005Crystal structure of a translation termination complex formed with release factor RF2.X-ray diffraction32014-07-09
94V87|1|BCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding.X-ray diffraction3.12014-07-09
104V8F|1|CCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.32014-07-09
114V9I|1|CVTransfer RNAmRNA, P-SITE tRNAEscherichia coliBacteriaRF00005Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
124V6A|1|CWTransfer RNARNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-MetEscherichia coliBacteriaRF00005Structure of EF-P bound to the 70S ribosome.X-ray diffraction3.12014-07-09
134V63|1|CYTransfer RNAmRNA, P and E-site tRNA(fMet)Escherichia coliBacteriaRF00005Structural basis for translation termination on the 70S ribosome.X-ray diffraction3.212014-07-09
144V67|1|CYTransfer RNAMRNA, P AND E-SITE TRNA(FMET)Escherichia coliBacteriaRF00005Crystal structure of a translation termination complex formed with release factor RF2.X-ray diffraction32014-07-09
154V8C|1|DCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
164YZV|1|QVTransfer RNAmessenger RNA, P-site tRNA-fMetEscherichia coliBacteriaRF00005Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-ray diffraction3.12015-10-21
174Z3S|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
185DOY|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
194V8B|1|ACTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
204V63|1|AZTransfer RNAP and E-site tRNA(fMet)Escherichia coliBacteriaRF00005Structural basis for translation termination on the 70S ribosome.X-ray diffraction3.212014-07-09
214V67|1|AZTransfer RNAP AND E-SITE TRNA(FMET)Escherichia coliBacteriaRF00005Crystal structure of a translation termination complex formed with release factor RF2.X-ray diffraction32014-07-09
224V8E|1|BCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
234V8Q|1|BVTransfer RNAE-SITE or P-SITE TRNA FMET, MRNAEscherichia coliBacteriaRF00005Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-ray diffraction3.12014-07-09
244V8B|1|CCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
254V6G|1|CCTransfer RNAMRNA, TRNA FMET (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Initiation complex of 70S ribosome with two tRNAs and mRNA.X-ray diffraction3.52014-07-09
264V8C|1|CCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
274V63|1|CZTransfer RNAP and E-site tRNA(fMet)Escherichia coliBacteriaRF00005Structural basis for translation termination on the 70S ribosome.X-ray diffraction3.212014-07-09
284V67|1|CZTransfer RNAP AND E-SITE TRNA(FMET)Escherichia coliBacteriaRF00005Crystal structure of a translation termination complex formed with release factor RF2.X-ray diffraction32014-07-09
294V8E|1|DCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
304LT8|1|QVTransfer RNAA-site ASL Pro, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-ray diffraction3.142014-08-06
314LNT|1|XVTransfer RNAA-site ASL SufA6, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-ray diffraction2.942014-08-06
324W4G|1|XVTransfer RNAmessenger RNA, tRNA fMetEscherichia coliBacteriaRF00005Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
334LT8|1|XVTransfer RNAA-site ASL Pro, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-ray diffraction3.142014-08-06
344YZV|1|XVTransfer RNAmessenger RNA, P-site tRNA-fMetEscherichia coliBacteriaRF00005Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-ray diffraction3.12015-10-21
355HCP|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.892016-04-06
365HCQ|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
375HCR|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
384Y4P|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
394WRO|1|2KTransfer RNARNA (30-MER), tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
404Y4P|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
414Z8C|1|2xTransfer RNAInitiator Methionine tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-ray diffraction2.92015-05-20
423CW5|1|ATransfer RNAInitiator tRNAEscherichia coliBacteriaRF00005E. coli Initiator tRNAX-ray diffraction3.12008-09-02
434W2I|1|AXTransfer RNAE-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
444W2G|1|AXTransfer RNAE-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
454W2F|1|AXTransfer RNAE-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
461VY5|1|AXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
474W2H|1|AXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
484W2I|1|CXTransfer RNAE-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
494W2G|1|CXTransfer RNAE-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
504W2F|1|CXTransfer RNAE-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
511VY5|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
524V5C|1|AVTransfer RNAMRNA, P-SITE TRNA FMETEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
535DOY|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
544Z3S|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
551VY6|1|AXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.92014-08-20
561VY4|1|AXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
571VY7|1|AXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
581VY6|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.92014-08-20
594WPO|1|DXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
604V8D|1|ACTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
614V9I|1|AVTransfer RNAmRNA, P-SITE tRNAEscherichia coliBacteriaRF00005Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
624V6A|1|AWTransfer RNARNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-MetEscherichia coliBacteriaRF00005Structure of EF-P bound to the 70S ribosome.X-ray diffraction3.12014-07-09
634V87|1|CCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding.X-ray diffraction3.12014-07-09
644V7M|1|CXTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), RNA (77-MER)Escherichia coliBacteriaRF00005The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
654LNT|1|QVTransfer RNAA-site ASL SufA6, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-ray diffraction2.942014-08-06
664YPB|1|QVTransfer RNAmessenger RNA, tRNA fMetEscherichia coliBacteriaRF00005Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
674YPB|1|XVTransfer RNAmessenger RNA, tRNA fMetEscherichia coliBacteriaRF00005Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
685HAU|1|1wTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction32016-04-06
694Z8C|1|1xTransfer RNAInitiator Methionine tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-ray diffraction2.92015-05-20
704ZER|1|1xTransfer RNAmRNA, tRNA metEscherichia coliBacteriaRF00005Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction3.12015-05-20
715HD1|1|1xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
725EL4|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-ray diffraction3.152016-01-27
734WQR|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
744WT1|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
754WSD|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
765EL6|1|2KTransfer RNAE. coli tRNAfMet, mRNAEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-ray diffraction3.12016-01-27
775EL7|1|2KTransfer RNAE. coli tRNAfMet, mRNAEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycinX-ray diffraction3.152016-01-27
785HAU|1|2wTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction32016-04-06
794ZER|1|2xTransfer RNAmRNA, tRNA metEscherichia coliBacteriaRF00005Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction3.12015-05-20
805HCR|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
815HD1|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
825HCP|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.892016-04-06
835HCQ|1|2xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
843CW6|1|ATransfer RNAInitiator tRNAEscherichia coliBacteriaRF00005E. coli Initiator tRNAX-ray diffraction3.32008-09-02
854WQY|1|BXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-ray diffraction2.82015-01-28
864V8D|1|CCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
874LSK|1|QVTransfer RNAA-site ASL SufA6, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-ray diffraction3.482014-08-06
881VVJ|1|QVTransfer RNAA-site ASL SufA6, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-ray diffraction3.442014-08-06
894W4G|1|QVTransfer RNAmessenger RNA, tRNA fMetEscherichia coliBacteriaRF00005Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
904LSK|1|XVTransfer RNAA-site ASL SufA6, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-ray diffraction3.482014-08-06
911VVJ|1|XVTransfer RNAA-site ASL SufA6, messenger RNA, P-site tRNA fMetEscherichia coliBacteriaRF00005Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-ray diffraction3.442014-08-06
924WR6|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
934WPO|1|BXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
944V6G|1|CBTransfer RNAMRNA, TRNA FMET (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Initiation complex of 70S ribosome with two tRNAs and mRNA.X-ray diffraction3.52014-07-09
955F8K|1|1xTransfer RNAmRNA, tRNAiMetEscherichia coliBacteriaRF00005Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
965EL5|1|2KTransfer RNAmRNA, tRNAfMetEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second positionX-ray diffraction3.152016-01-27
974WQ1|1|2KTransfer RNAmRNA, tRNA-fMETEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.12015-06-10
985E7K|1|2KTransfer RNAmRNA, tRNAfMetEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-ray diffraction3.22016-01-27
994WQ1|1|2LTransfer RNAmRNA, tRNA-fMETEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.12015-06-10
1004WSD|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
1015EL6|1|2LTransfer RNAE. coli tRNAfMet, mRNAEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-ray diffraction3.12016-01-27
1025F8K|1|2xTransfer RNAmRNA, tRNAiMetEscherichia coliBacteriaRF00005Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
1034W2H|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
1044WQY|1|DXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-ray diffraction2.82015-01-28
1054V51|1|AVTransfer RNAE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)Escherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
1064V51|1|CVTransfer RNAE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)Escherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
1074WRA|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.052015-06-10
1084WZO|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1094V6G|1|ACTransfer RNAMRNA, TRNA FMET (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Initiation complex of 70S ribosome with two tRNAs and mRNA.X-ray diffraction3.52014-07-09
1104V5K|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
1114V7L|1|AXTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-MetEscherichia coliBacteriaRF00005The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
1121VY4|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1131VY7|1|CXTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
1144WZO|1|1KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1154WZO|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1165E7K|1|2LTransfer RNAmRNA, tRNAfMetEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-ray diffraction3.22016-01-27
1172FMT|1|CFORMYL-METHIONYL-TRNAFMET2synthetic constructMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-ray diffraction2.81999-07-29
1182FMT|1|DFORMYL-METHIONYL-TRNAFMET2synthetic constructMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-ray diffraction2.81999-07-29
1194V5C|1|CVTransfer RNAMRNA, P-SITE TRNA FMETEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1204WRA|1|2KTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.052015-06-10
1215AFI|1|vTransfer RNAmRNA, P-site fMet-tRNAfMetEscherichia coliBacteriaRF000052.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
1224V8F|1|BCTransfer RNAMRNA, TRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.32014-07-09
1234V6G|1|CDTransfer RNATRNA FMET (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Initiation complex of 70S ribosome with two tRNAs and mRNA.X-ray diffraction3.52014-07-09
1245EL4|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-ray diffraction3.152016-01-27
1254WRO|1|2LTransfer RNARNA (30-MER), tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1264V5K|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
1275EL5|1|2LTransfer RNAmRNA, tRNAfMetEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second positionX-ray diffraction3.152016-01-27
1284WQR|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
1294WT1|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1305EL7|1|2LTransfer RNAE. coli tRNAfMet, mRNAEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycinX-ray diffraction3.152016-01-27
1314YPB|1|QWTransfer RNAtRNA fMetEscherichia coliBacteriaRF00005Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
1324W4G|1|QWTransfer RNAtRNA fMetEscherichia coliBacteriaRF00005Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
1334W4G|1|XWTransfer RNAtRNA fMetEscherichia coliBacteriaRF00005Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
1344YPB|1|XWTransfer RNAtRNA fMetEscherichia coliBacteriaRF00005Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
1354WR6|1|2LTransfer RNAmRNA, tRNA-fMetEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
1364V6G|1|ADTransfer RNATRNA FMET (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Initiation complex of 70S ribosome with two tRNAs and mRNA.X-ray diffraction3.52014-07-09
1374V7L|1|CXTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-MetEscherichia coliBacteriaRF00005The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
1384V8Q|1|BWTransfer RNAE-SITE or P-SITE TRNA FMETEscherichia coliBacteriaRF00005Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-ray diffraction3.12014-07-09
1394V8C|1|CDTransfer RNATRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
1404V8B|1|ADTransfer RNATRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
1414V87|1|CDTransfer RNATRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding.X-ray diffraction3.12014-07-09
1424V8C|1|DDTransfer RNATRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
1434V87|1|BDTransfer RNATRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding.X-ray diffraction3.12014-07-09
1444V8B|1|CDTransfer RNATRNA-FMETEscherichia coliBacteriaRF00005Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
1455AFI|1|wTransfer RNAP-site fMet-tRNAfMetEscherichia coliBacteriaRF000052.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
1463QSY|1|DTransfer RNAtRNAEscherichia coliBacteriaRF00005Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in ArchaeaX-ray diffraction3.22012-03-21
1474V5K|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
1484V5K|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09

Release history

Release2.702.712.72
Date2016-04-082016-04-152016-04-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_35542.17NR_all_35542.162.70(138) 1VVJ|1|QV, 1VVJ|1|XV, 1VY4|1|AX, 1VY4|1|CX, 1VY5|1|AX, 1VY5|1|CX, 1VY6|1|AX, 1VY6|1|CX, 1VY7|1|AX, 1VY7|1|CX, 2FMT|1|C, 2FMT|1|D, 3CW5|1|A, 3CW6|1|A, 3JCE|1|8, 3QSY|1|D, 4LNT|1|QV, 4LNT|1|XV, 4LSK|1|QV, 4LSK|1|XV, 4LT8|1|QV, 4LT8|1|XV, 4V51|1|AV, 4V51|1|CV, 4V5C|1|AV, 4V5C|1|CV, 4V5K|1|AV, 4V5K|1|AW, 4V5K|1|CV, 4V5K|1|CW, 4V63|1|AY, 4V63|1|AZ, 4V63|1|CY, 4V63|1|CZ, 4V67|1|AY, 4V67|1|AZ, 4V67|1|CY, 4V67|1|CZ, 4V6A|1|AW, 4V6A|1|CW, 4V6G|1|AC, 4V6G|1|AD, 4V6G|1|CB, 4V6G|1|CC, 4V6G|1|CD, 4V7L|1|AX, 4V7L|1|CX, 4V7M|1|AX, 4V7M|1|CX, 4V87|1|BC, 4V87|1|BD, 4V87|1|CC, 4V87|1|CD, 4V8B|1|AC, 4V8B|1|AD, 4V8B|1|CC, 4V8B|1|CD, 4V8C|1|CC, 4V8C|1|CD, 4V8C|1|DC, 4V8C|1|DD, 4V8D|1|AC, 4V8D|1|CC, 4V8E|1|BC, 4V8E|1|DC, 4V8F|1|BC, 4V8F|1|CC, 4V8Q|1|BV, 4V8Q|1|BW, 4V9I|1|AV, 4V9I|1|CV, 4V9R|1|AX, 4V9R|1|CX, 4V9S|1|AX, 4V9S|1|CX, 4W2F|1|AX, 4W2F|1|CX, 4W2G|1|AX, 4W2G|1|CX, 4W2H|1|AX, 4W2H|1|CX, 4W2I|1|AX, 4W2I|1|CX, 4W4G|1|QV, 4W4G|1|QW, 4W4G|1|XV, 4W4G|1|XW, 4WPO|1|BX, 4WPO|1|DX, 4WQ1|1|2K, 4WQ1|1|2L, 4WQR|1|2K, 4WQR|1|2L, 4WQY|1|BX, 4WQY|1|DX, 4WR6|1|2K, 4WR6|1|2L, 4WRA|1|2K, 4WRA|1|2L, 4WRO|1|2K, 4WRO|1|2L, 4WSD|1|2K, 4WSD|1|2L, 4WT1|1|2K, 4WT1|1|2L, 4WZO|1|1K, 4WZO|1|2K, 4WZO|1|2L, 4Y4P|1|1x, 4Y4P|1|2x, 4YPB|1|QV, 4YPB|1|QW, 4YPB|1|XV, 4YPB|1|XW, 4YZV|1|QV, 4YZV|1|XV, 4Z3S|1|1x, 4Z3S|1|2x, 4Z8C|1|1x, 4Z8C|1|2x, 4ZER|1|1x, 4ZER|1|2x, 5AFI|1|v, 5AFI|1|w, 5DOY|1|1x, 5DOY|1|2x, 5E7K|1|2K, 5E7K|1|2L, 5EL4|1|2K, 5EL4|1|2L, 5EL5|1|2K, 5EL5|1|2L, 5EL6|1|2K, 5EL6|1|2L, 5EL7|1|2K, 5EL7|1|2L, 5F8K|1|1x, 5F8K|1|2x(10) 5HAU|1|1w, 5HAU|1|2w, 5HCP|1|1x, 5HCP|1|2x, 5HCQ|1|1x, 5HCQ|1|2x, 5HCR|1|1x, 5HCR|1|2x, 5HD1|1|1x, 5HD1|1|2x(69) 1EG0|1|O, 3DEG|1|B, 3J5S|1|E, 3J77|1|PT, 3J78|1|ET, 3J78|1|PT, 3J9Y|1|v, 3JBN|1|7, 3JBO|1|7, 3JCJ|1|v, 3JCN|1|v, 3V11|1|D, 4L71|1|QV, 4L71|1|XV, 4LEL|1|QV, 4LEL|1|XV, 4LFZ|1|QV, 4LFZ|1|XV, 4P6F|1|QV, 4P6F|1|XV, 4P70|1|QV, 4P70|1|XV, 4TUA|1|QV, 4TUA|1|XV, 4TUB|1|QV, 4TUB|1|XV, 4TUC|1|QV, 4TUC|1|XV, 4TUD|1|QV, 4TUD|1|XV, 4V4X|1|AC, 4V4Z|1|AC, 4V5F|1|AV, 4V5F|1|AW, 4V5F|1|CV, 4V5F|1|CW, 4V69|1|AV, 4V6N|1|BD, 4V6O|1|AD, 4V6P|1|AD, 4V6Q|1|AD, 4V6R|1|AD, 4V6S|1|BC, 4V6T|1|AX, 4V6V|1|A3, 4V6Y|1|A3, 4V6Z|1|A3, 4V70|1|A3, 4V71|1|A3, 4V72|1|A3, 4V73|1|A3, 4V74|1|A3, 4V75|1|A3, 4V76|1|A3, 4V77|1|A3, 4V78|1|A3, 4V79|1|A3, 4V7B|1|AV, 4V7P|1|AW, 4V7P|1|DW, 4V8J|1|AV, 4V8J|1|CV, 4V8O|1|AV, 4V97|1|AV, 4V97|1|CV, 5D8B|1|BD, 5D8B|1|ED, 5D8B|1|FD, 5D8B|1|XC

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15AFI|1|w2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.973
25EL6|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-RAY DIFFRACTION3.172
35E7K|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-RAY DIFFRACTION3.272
45EL5|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second positionX-RAY DIFFRACTION3.1572
54WRA|1|2KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0573
64V8F|1|CCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.377
74V8D|1|CCStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION377
84WQ1|1|2LComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.172
94WRA|1|2LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0573
104WR6|1|2LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0572
115EL7|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycinX-RAY DIFFRACTION3.1572
125EL5|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second positionX-RAY DIFFRACTION3.1572
134V8E|1|BCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.377
144V8E|1|DCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.377
154WSD|1|2LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9572
165EL6|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-RAY DIFFRACTION3.172
175E7K|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-RAY DIFFRACTION3.272
184WZO|1|2LComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.373
194WRO|1|2LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0572
204WT1|1|2LComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0572
214WQR|1|2LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1572
225EL4|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-RAY DIFFRACTION3.1571
235EL7|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycinX-RAY DIFFRACTION3.1572
244WQ1|1|2KComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.172
254WSD|1|2KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9572
264WR6|1|2KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0571
274WZO|1|2KComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.372
285EL4|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-RAY DIFFRACTION3.1572
294WRO|1|2KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0572
304WT1|1|2KComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0572
314V8D|1|ACStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION377
324V8F|1|BCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.377
334WQR|1|2KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1572
344V8C|1|DCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
354V8B|1|CCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
364V87|1|CCCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
374V8C|1|CCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
384V87|1|BCCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
394V8B|1|ACCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
404V6G|1|CCInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
415HCQ|1|2xCrystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.872
424Z8C|1|2xCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.972
435HCP|1|2xCrystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8972
445HCR|1|2xCrystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.872
455HD1|1|2xCrystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.772
465HAU|1|2wCrystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION372
475HAU|1|1wCrystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION372
485HCP|1|1xCrystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8972
495HCR|1|1xCrystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.872
505HD1|1|1xCrystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.772
514Z8C|1|1xCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.972
525HCQ|1|1xCrystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.872
535DOY|1|1xCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.671
544W2I|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.772
551VY7|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.871
561VY6|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.971
571VY4|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.671
581VY5|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5572
594W2G|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5572
604V9R|1|AXCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION376
614V9S|1|AXCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.176
624Z3S|1|1xCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6571
634WPO|1|BXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.871
644WQY|1|BXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.872
654W2H|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.772
664W2F|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.472
674Y4P|1|1xCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.572
684ZER|1|2xCrystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3.172
695F8K|1|2xCrystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.872
704ZER|1|1xCrystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3.172
715F8K|1|1xCrystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.872
724V5K|1|AVStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
735AFI|1|v2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.973
744V5C|1|CVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
754V5K|1|CVStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
763JCE|1|8Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.277
774V51|1|CVStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
784V51|1|AVStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
794V9I|1|CVCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.377
804V9I|1|AVCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.377
814V7L|1|AXThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION377
824V5C|1|AVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
834V7M|1|CXThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.4577
844V7M|1|AXThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.4577
854V7L|1|CXThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION377
864LT8|1|QVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.1477
874LNT|1|QVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.9477
884LNT|1|XVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.9477
894LT8|1|XVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.1477
901VVJ|1|QVCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.4477
914LSK|1|QVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.4877
924LSK|1|XVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.4877
931VVJ|1|XVCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.4477
944YPB|1|QVPrecleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.477
954YZV|1|QVPrecleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-RAY DIFFRACTION3.177
964W4G|1|QVPostcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.377
974YZV|1|XVPrecleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-RAY DIFFRACTION3.177
984YPB|1|XVPrecleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.477
994W4G|1|XVPostcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.377
1004V67|1|AYCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
1014V67|1|CYCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
1024V8Q|1|BVComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.177
1034V63|1|AYStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
1044V63|1|CYStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
1054V6A|1|CWStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.177
1064V6A|1|AWStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.177
1071VY7|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.871
1081VY6|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.971
1091VY5|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5572
1101VY4|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.671
1114WPO|1|DXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.871
1124WQY|1|DXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.872
1134W2F|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.472
1144W2G|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5572
1154Z3S|1|2xCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6571
1164Y4P|1|2xCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.572
1175DOY|1|2xCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.671
1184W2I|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.772
1194W2H|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.772
1204V9R|1|CXCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION376
1214V9S|1|CXCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.176
1224V6G|1|ACInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
1234WZO|1|1KComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.368
1244V6G|1|CBInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.565
1254V5K|1|AWStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
1264V5K|1|CWStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
1274V8Q|1|BWComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.177
1284V63|1|CZStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
1294V63|1|AZStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
1304V67|1|CZCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
1314V67|1|AZCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
1324V6G|1|CDInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
1334W4G|1|XWPostcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.377
1344YPB|1|XWPrecleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.477
1354YPB|1|QWPrecleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.477
1364W4G|1|QWPostcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.377
1374V87|1|BDCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
1384V8B|1|ADCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
1394V8C|1|CDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
1404V8C|1|DDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
1414V8B|1|CDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
1424V87|1|CDCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
1434V6G|1|ADInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
1443CW6|1|AE. coli Initiator tRNAX-RAY DIFFRACTION3.372
1453CW5|1|AE. coli Initiator tRNAX-RAY DIFFRACTION3.172
1462FMT|1|DMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-RAY DIFFRACTION2.872
1472FMT|1|CMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-RAY DIFFRACTION2.872
1483QSY|1|DRecognition of the methionylated initiator tRNA by the translation initiation factor 2 in ArchaeaX-RAY DIFFRACTION3.277

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0574 s