Equivalence class NR_3.5_41610.10 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TPQ|1|U (rep) | Large subunit ribosomal RNA | pre-23S rRNA | Bacillus subtilis | Bacteria | RF02541 | RNase M5 bound to 50S ribosome with precursor 5S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 2 | 7AQD|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of the bacterial RQC complex (Translocating State) | Electron microscopy | 3.1 | 2020-11-25 |
| 3 | 7AQC|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2020-11-25 |
| 4 | 6TNN|1|U | Large subunit ribosomal RNA | pre-23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 5 | 7AS8|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 2.9 | 2020-12-09 |
| 6 | 6HA1|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis | Bacteria | RF02541 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 7 | 7AS9|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | Electron microscopy | 3.5 | 2020-12-23 |
| 8 | 6HA8|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | Electron microscopy | 3.5 | 2018-08-29 |
| 9 | 6PPF|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Bacterial 45SRbgA ribosomal particle class B | Electron microscopy | 3.4 | 2019-09-18 |
| 10 | 6PVK|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Bacterial 45SRbgA ribosomal particle class A | Electron microscopy | 3.4 | 2019-09-18 |
| 11 | 7ASA|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 3.5 | 2020-12-23 |
Release history
| Release | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 |
Parents
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6TPQ|1|U | RNase M5 bound to 50S ribosome with precursor 5S rRNA | ELECTRON MICROSCOPY | 3.07 | 2924 | |
| 2 | 6TNN|1|U | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | ELECTRON MICROSCOPY | 3.07 | 2930 | |
| 3 | 6PPF|1|A | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 2471 | |
| 4 | 6PVK|1|A | Bacterial 45SRbgA ribosomal particle class A | ELECTRON MICROSCOPY | 3.4 | 2169 | |
| 5 | 7AQD|1|A | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 2918 | |
| 6 | 7AQC|1|A | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 2820 | |
| 7 | 6HA8|1|A | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 2887 | |
| 8 | 7AS9|1|A | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | ELECTRON MICROSCOPY | 3.5 | 2812 | |
| 9 | 6HA1|1|A | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 2887 | |
| 10 | 7AS8|1|A | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 2812 | |
| 11 | 7ASA|1|A | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 3.5 | 82 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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