Equivalence class NR_3.5_41668.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4LJ0|1|C (rep) | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 2 | 4LJ0|1|D | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 3 | 4LJ0|1|E | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 4 | 7M50|1|TT+ 7M50|1|kk | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-ray diffraction | 2.31 | 2021-12-15 | |||
| 5 | 5BKN|1|P | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 6 | 5BKN|1|S+ 5BKN|1|h | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 7 | 5BKN|1|a | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 8 | 7OGK|1|D | 3'ETS(LeuZ) | Escherichia coli | A cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ) | Electron microscopy | 3.4 | 2021-07-07 |
Release history
| Release | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_41668.1 | NR_3.5_80093.3 | 3.209 | (4) 4LJ0|1|C, 4LJ0|1|D, 4LJ0|1|E, 7OGK|1|D | (4) 5BKN|1|a, 5BKN|1|P, 5BKN|1|S+5BKN|1|h, 7M50|1|TT+7M50|1|kk | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_41668.1 | NR_3.5_41668.2 | 3.270 | (8) 4LJ0|1|C, 4LJ0|1|D, 4LJ0|1|E, 5BKN|1|a, 5BKN|1|P, 5BKN|1|S+5BKN|1|h, 7M50|1|TT+7M50|1|kk, 7OGK|1|D | (0) | (1) 8CX0|1|K |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5BKN|1|a | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 4 | |
| 2 | 4LJ0|1|E | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 2 | |
| 3 | 4LJ0|1|D | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 | |
| 4 | 4LJ0|1|C | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 | |
| 5 | 7OGK|1|D | A cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ) | ELECTRON MICROSCOPY | 3.4 | 8 | |
| 6 | 7M50|1|TT+ 7M50|1|kk | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-RAY DIFFRACTION | 2.31 | 7 | |
| 7 | 5BKN|1|S+ 5BKN|1|h | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 6 | |
| 8 | 5BKN|1|P | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 7 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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