Equivalence class NR_3.5_45043.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WRT|1|V+ 4WRT|1|R (rep) | Influenza virus polymerase vRNA promoter 3' end, Influenza virus polymerase vRNA promoter 5' end | Influenza B virus | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-ray diffraction | 2.7 | 29 | 2014-11-19 | |||
| 2 | 6QCW|1|V+ 6QCW|1|R+ 6QCW|1|M | RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-ray diffraction | 2.88 | 49 | 2019-06-05 | |||
| 3 | 6QCX|1|V+ 6QCX|1|R+ 6QCX|1|M | RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-ray diffraction | 3.08 | 50 | 2019-06-05 | |||
| 4 | 7Z43|1|VVV+ 7Z43|1|RRR | RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | Influenza B virus | Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B | X-ray diffraction | 3.123 | 32 | 2022-05-11 | |||
| 5 | 6QCV|1|V+ 6QCV|1|R+ 6QCV|1|M | RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-ray diffraction | 3.24 | 49 | 2019-06-05 | |||
| 6 | 4WSA|1|V+ 4WSA|1|R | Influenza B vRNA promoter 3' end, Influenza B vRNA promoter 5' end | Influenza B virus | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-ray diffraction | 3.4 | 28 | 2014-11-19 | |||
| 7 | 5M3J|1|V+ 5M3J|1|R | RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | Influenza B virus | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-ray diffraction | 3.5 | 28 | 2016-12-21 | |||
| 8 | 6T0N|1|V+ 6T0N|1|R | 3' vRNA, 5' vRNA | Influenza B virus | Bat Influenza A polymerase pre-initiation complex | Electron microscopy | 2.54 | 29 | 2020-04-15 | |||
| 9 | 6QCS|1|V+ 6QCS|1|R | 3 end, 5 end | Influenza B virus | Influenza B polymerase pre-initiation complex | Electron microscopy | 3.1 | 29 | 2019-06-05 |
Release history
| Release | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_45043.4 | NR_3.5_45043.3 | 3.230 | (8) 4WRT|1|V+4WRT|1|R, 4WSA|1|V+4WSA|1|R, 5M3J|1|V+5M3J|1|R, 6QCS|1|V+6QCS|1|R, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6T0N|1|V+6T0N|1|R | (1) 7Z43|1|VVV+7Z43|1|RRR | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_45043.4 | NR_3.5_14145.1 | 3.263 | (9) 4WRT|1|V+4WRT|1|R, 4WSA|1|V+4WSA|1|R, 5M3J|1|V+5M3J|1|R, 6QCS|1|V+6QCS|1|R, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6T0N|1|V+6T0N|1|R, 7Z43|1|VVV+7Z43|1|RRR | (0) | (9) 6QCT|1|V, 6SZV|1|V, 6T0V|1|V, 7QTL|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7R1F|1|V, 7ZPL|1|U, 7ZPL|1|V, 8BEK|1|V+8BEK|1|R+8BEK|1|M |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6QCV|1|V+ 6QCV|1|R+ 6QCV|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-RAY DIFFRACTION | 3.24 | 49 | |
| 2 | 6QCX|1|V+ 6QCX|1|R+ 6QCX|1|M | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-RAY DIFFRACTION | 3.08 | 50 | |
| 3 | 6QCW|1|V+ 6QCW|1|R+ 6QCW|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-RAY DIFFRACTION | 2.88 | 49 | |
| 4 | 7Z43|1|VVV+ 7Z43|1|RRR | Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B | X-RAY DIFFRACTION | 3.123 | 32 | |
| 5 | 5M3J|1|V+ 5M3J|1|R | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-RAY DIFFRACTION | 3.5 | 28 | |
| 6 | 4WSA|1|V+ 4WSA|1|R | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-RAY DIFFRACTION | 3.4 | 28 | |
| 7 | 6QCS|1|V+ 6QCS|1|R | Influenza B polymerase pre-initiation complex | ELECTRON MICROSCOPY | 3.1 | 29 | |
| 8 | 4WRT|1|V+ 4WRT|1|R | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-RAY DIFFRACTION | 2.7 | 29 | |
| 9 | 6T0N|1|V+ 6T0N|1|R | Bat Influenza A polymerase pre-initiation complex | ELECTRON MICROSCOPY | 2.54 | 29 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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