Equivalence class NR_3.5_46995.16 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ZMI|1|S2 (rep) | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | Electron microscopy | 2.6 | 2020-08-19 |
| 2 | 6ZM7|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 2020-07-29 |
| 3 | 6ZLW|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | Electron microscopy | 2.6 | 2020-07-29 |
| 4 | 6ZVH|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | EDF1-ribosome complex | Electron microscopy | 2.9 | 2020-08-19 |
| 5 | 6Z6N|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 2020-07-29 |
| 6 | 6ZOJ|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, composite map | Electron microscopy | 2.8 | 2020-07-22 |
| 7 | 6ZP4|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | Electron microscopy | 2.9 | 2020-07-29 |
| 8 | 6QZP|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1740-MER) | Homo sapiens | Eukarya | RF01960 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 9 | 6ZME|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 2020-08-12 |
| 10 | 6Z6L|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 2020-07-29 |
| 11 | 6EK0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2018-01-24 |
| 12 | 6ZON|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | Electron microscopy | 3 | 2020-07-29 |
| 13 | 6ZMO|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | Electron microscopy | 3.1 | 2020-08-19 |
| 14 | 6Z6M|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | Electron microscopy | 3.1 | 2020-07-29 |
| 15 | 6Y2L|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in POST state | Electron microscopy | 3 | 2020-04-15 |
| 16 | 6XA1|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a drug-like compound stalled human translation termination complex | Electron microscopy | 2.8 | 2020-10-07 |
| 17 | 6OM0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 18 | 6OLE|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 19 | 6ZN5|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2 | Electron microscopy | 3.2 | 2020-07-29 |
| 20 | 6Y0G|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in classical-PRE state | Electron microscopy | 3.2 | 2020-04-15 |
| 21 | 6ZMT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | Electron microscopy | 3 | 2020-08-19 |
| 22 | 1VX5|1|2 | 18S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit. | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 23 | 3J74|1|S2 | 18S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 24 | 6OLG|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 2019-06-19 |
| 25 | 6OLI|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 2019-06-19 |
| 26 | 6Y57|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
| 27 | 6G5I|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | Electron microscopy | 3.5 | 2018-06-06 |
| 28 | 6ZOK|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, focused on body | Electron microscopy | 2.8 | 2020-07-29 |
| 29 | 5AJ0|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
| 30 | 6YBW|1|A | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a human 48S translational initiation complex - 40S body | Electron microscopy | 3.1 | 2020-09-16 |
| 31 | 6ZOL|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, focused on head | Electron microscopy | 2.8 | 2020-07-22 |
Release history
| Release | 3.147 |
|---|---|
| Date | 2020-10-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_46995.16 | NR_3.5_46995.15 | 3.147 | (30) 1VX5|1|2, 3J74|1|S2, 5AJ0|1|B1, 6EK0|1|S2, 6G5I|1|2, 6OLE|1|S2, 6OLG|1|B1, 6OLI|1|S2, 6OM0|1|S2, 6QZP|1|S2, 6Y0G|1|S2, 6Y2L|1|S2, 6Y57|1|S2, 6YBW|1|A, 6Z6L|1|S2, 6Z6M|1|S2, 6Z6N|1|S2, 6ZLW|1|2, 6ZM7|1|S2, 6ZME|1|S2, 6ZMI|1|S2, 6ZMO|1|S2, 6ZMT|1|2, 6ZN5|1|2, 6ZOJ|1|2, 6ZOK|1|2, 6ZOL|1|2, 6ZON|1|2, 6ZP4|1|2, 6ZVH|1|2 | (1) 6XA1|1|S2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_46995.16 | NR_3.5_46995.17 | 3.148 | (31) 1VX5|1|2, 3J74|1|S2, 5AJ0|1|B1, 6EK0|1|S2, 6G5I|1|2, 6OLE|1|S2, 6OLG|1|B1, 6OLI|1|S2, 6OM0|1|S2, 6QZP|1|S2, 6XA1|1|S2, 6Y0G|1|S2, 6Y2L|1|S2, 6Y57|1|S2, 6YBW|1|A, 6Z6L|1|S2, 6Z6M|1|S2, 6Z6N|1|S2, 6ZLW|1|2, 6ZM7|1|S2, 6ZME|1|S2, 6ZMI|1|S2, 6ZMO|1|S2, 6ZMT|1|2, 6ZN5|1|2, 6ZOJ|1|2, 6ZOK|1|2, 6ZOL|1|2, 6ZON|1|2, 6ZP4|1|2, 6ZVH|1|2 | (0) | (2) 7A09|1|2, 7K5I|1|2 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6OM0|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 | |
| 2 | 6OLI|1|S2 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 1680 | |
| 3 | 6OLE|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 | |
| 4 | 6Y0G|1|S2 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 5 | 6Y57|1|S2 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 1658 | |
| 6 | 6Y2L|1|S2 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 1713 | |
| 7 | 6XA1|1|S2 | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 1512 | |
| 8 | 6QZP|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1707 | |
| 9 | 6EK0|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1706 | |
| 10 | 6Z6N|1|S2 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 1740 | |
| 11 | 6Z6L|1|S2 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 1740 | |
| 12 | 6ZMO|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | ELECTRON MICROSCOPY | 3.1 | 1740 | |
| 13 | 6ZMI|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 1740 | |
| 14 | 6ZM7|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 1740 | |
| 15 | 6ZME|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 1740 | |
| 16 | 6ZVH|1|2 | EDF1-ribosome complex | ELECTRON MICROSCOPY | 2.9 | 1740 | |
| 17 | 5AJ0|1|B1 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 1708 | |
| 18 | 6OLG|1|B1 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 1708 | |
| 19 | 6ZN5|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2 | ELECTRON MICROSCOPY | 3.2 | 1671 | |
| 20 | 6ZLW|1|2 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | ELECTRON MICROSCOPY | 2.6 | 1665 | |
| 21 | 6ZOL|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on head | ELECTRON MICROSCOPY | 2.8 | 472 | |
| 22 | 6ZOJ|1|2 | SARS-CoV-2-Nsp1-40S complex, composite map | ELECTRON MICROSCOPY | 2.8 | 1704 | |
| 23 | 6ZOK|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on body | ELECTRON MICROSCOPY | 2.8 | 1232 | |
| 24 | 6ZON|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | ELECTRON MICROSCOPY | 3 | 1721 | |
| 25 | 6Z6M|1|S2 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.1 | 1740 | |
| 26 | 6YBW|1|A | Structure of a human 48S translational initiation complex - 40S body | ELECTRON MICROSCOPY | 3.1 | 1196 | |
| 27 | 6ZP4|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 1721 | |
| 28 | 6ZMT|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | ELECTRON MICROSCOPY | 3 | 1569 | |
| 29 | 6G5I|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 1657 | |
| 30 | 3J74|1|S2 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 1742 | |
| 31 | 1VX5|1|2 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.5 | 1742 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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