Equivalence class NR_3.5_50138.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7NHN|1|a (rep) | Small subunit ribosomal RNA | 16S rRNA, RNA (5'-R(P*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') | Listeria monocytogenes EGD-e | Bacteria | RF00177 | VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes | Electron microscopy | 2.9 | 2021-05-05 |
| 2 | 8UU5|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA, F-Stop mRNA | Listeria innocua | Bacteria | RF00177 | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) | Electron microscopy | 3 | 2024-02-28 |
| 3 | 8UU4|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Listeria innocua | Bacteria | RF00177 | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A) | Electron microscopy | 3 | 2024-02-28 |
| 4 | 8UU8|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Listeria innocua | Bacteria | RF00177 | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C) | Electron microscopy | 3.1 | 2024-02-28 |
| 5 | 8UU9|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Listeria innocua | Bacteria | RF00177 | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) | Electron microscopy | 3.1 | 2024-02-28 |
| 6 | 8UU7|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Listeria innocua | Bacteria | RF00177 | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B) | Electron microscopy | 3.2 | 2024-02-28 |
| 7 | 8UU6|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Listeria innocua | Bacteria | RF00177 | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A) | Electron microscopy | 3.3 | 2024-02-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7NHN|1|a | VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes | ELECTRON MICROSCOPY | 2.9 | 1513 | |
| 2 | 8UU4|1|a | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A) | ELECTRON MICROSCOPY | 3 | 1516 | |
| 3 | 8UU7|1|a | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B) | ELECTRON MICROSCOPY | 3.2 | 1516 | |
| 4 | 8UU6|1|a | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A) | ELECTRON MICROSCOPY | 3.3 | 1516 | |
| 5 | 8UU8|1|a | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C) | ELECTRON MICROSCOPY | 3.1 | 1516 | |
| 6 | 8UU9|1|a | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) | ELECTRON MICROSCOPY | 3.1 | 1515 | |
| 7 | 8UU5|1|a | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) | ELECTRON MICROSCOPY | 3 | 1523 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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