Equivalence class NR_3.5_51779.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1Z7F|1|A (rep) | 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | X-ray diffraction | 2.1 | 2005-10-18 | ||||
| 2 | 405D|1|A+ 405D|1|B | RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3') | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | X-ray diffraction | 2.5 | 1999-01-13 | ||||
| 3 | 1Z79|1|A+ 1Z79|1|B | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-ray diffraction | 2.55 | 2005-10-18 | ||||
| 4 | 1YY0|1|A+ 1YY0|1|B | 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-ray diffraction | 3.2 | 2005-10-18 | ||||
| 5 | 1Z79|1|C | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-ray diffraction | 2.55 | 2005-10-18 | ||||
| 6 | 1YY0|1|C | 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-ray diffraction | 3.2 | 2005-10-18 |
Release history
| Release | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_51779.3 | NR_3.5_51779.2 | 2.132 | (6) 1YY0|1|A+1YY0|1|B, 1YY0|1|C, 1Z79|1|A+1Z79|1|B, 1Z79|1|C, 1Z7F|1|A, 405D|1|A+405D|1|B | (0) | (2) 1YRM|1|A+1YRM|1|B, 1YRM|1|C |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_51779.3 | NR_3.5_51779.4 | 2.153 | (6) 1YY0|1|A+1YY0|1|B, 1YY0|1|C, 1Z79|1|A+1Z79|1|B, 1Z79|1|C, 1Z7F|1|A, 405D|1|A+405D|1|B | (0) | (2) 1YRM|1|A+1YRM|1|B, 1YRM|1|C |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 405D|1|A+ 405D|1|B | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | X-RAY DIFFRACTION | 2.5 | 16 | |
| 2 | 1Z7F|1|A | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | X-RAY DIFFRACTION | 2.1 | 16 | |
| 3 | 1Z79|1|C | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-RAY DIFFRACTION | 2.55 | 15 | |
| 4 | 1YY0|1|C | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-RAY DIFFRACTION | 3.2 | 15 | |
| 5 | 1YY0|1|A+ 1YY0|1|B | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-RAY DIFFRACTION | 3.2 | 15 | |
| 6 | 1Z79|1|A+ 1Z79|1|B | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-RAY DIFFRACTION | 2.55 | 15 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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