Equivalence class NR_3.5_56726.28 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4V4Q|1|CA (rep) | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
2 | 4V4H|1|CA | Small subunit ribosomal RNA | 16S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
3 | 4V52|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
4 | 4V52|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
5 | 4V54|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
6 | 4V4Q|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
7 | 5LZD|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 |
8 | 4V64|1|CA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
9 | 5NWY|1|0 | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | Electron microscopy | 2.9 | 2017-07-19 |
10 | 4V6C|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
11 | 4V54|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
12 | 5J8A|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
13 | 4V64|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
14 | 5H5U|1|h | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Mechanistic insights into the alternative translation termination by ArfA and RF2 | Electron microscopy | 3.01 | 2017-01-25 |
15 | 5IT8|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
16 | 5J91|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
17 | 5J5B|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
18 | 5IT8|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
19 | 5J91|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
20 | 5J5B|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
21 | 5UYM|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA, mRNA | Escherichia coli | Bacteria | RF00177 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
22 | 4V4H|1|AA | Small subunit ribosomal RNA | 16S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
23 | 5J7L|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
24 | 4V7V|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
25 | 5J8A|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
26 | 5JC9|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
27 | 4V7S|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
28 | 5JC9|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
29 | 4V57|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
30 | 4WWW|1|QA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
31 | 5J7L|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
32 | 5MDV|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
33 | 4V57|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
34 | 4V7T|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
35 | 5J88|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
36 | 4V9P|1|FA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
37 | 5MDZ|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of the 70S ribosome (empty A site) | Electron microscopy | 3.1 | 2016-12-14 |
38 | 5MDW|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.06 | 2016-12-14 |
39 | 4YBB|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
40 | 4V9O|1|FA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
41 | 5IQR|1|2 | Small subunit ribosomal RNA | SSU rRNA | Escherichia coli | Bacteria | RF00177 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
42 | 4U1U|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
43 | 5LZE|1|a+ 5LZE|1|y+ 5LZE|1|v+ 5LZE|1|x | Small subunit ribosomal RNA + Selenocysteine transfer RNA + Transfer RNA | 16S ribosomal RNA, fMetSec-tRNASec, SECIS mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00177 + RF01852 + RF00005 | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | Electron microscopy | 3.5 | 2016-11-23 |
44 | 4V50|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
45 | 4V9O|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
46 | 5J88|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
47 | 5AFI|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
48 | 4U20|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
49 | 4V50|1|CA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
50 | 5MDY|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.35 | 2016-12-21 |
51 | 4V9P|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
52 | 4U1U|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
53 | 5MGP|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
54 | 4V6C|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
55 | 4U26|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
56 | 4U24|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
57 | 4YBB|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
58 | 4U20|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
59 | 4V7U|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
60 | 4U27|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
61 | 4WF1|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
62 | 4V9P|1|HA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
63 | 4U25|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
64 | 4V7T|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
65 | 4V9O|1|DA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
66 | 4U1V|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
67 | 4WOI|1|DA | Small subunit ribosomal RNA | 16S ribosomal RNA, Messenger RNA | Escherichia coli | Bacteria | RF00177 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
68 | 5U9G|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA, truncated mRNA | Escherichia coli | Bacteria | RF00177 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | Electron microscopy | 3.2 | 2017-03-22 |
69 | 4V9P|1|DA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
70 | 4V7S|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
71 | 4WWW|1|XA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
72 | 4V9D|1|BA | Small subunit ribosomal RNA | 16S rRNA, messenger RNA | Escherichia coli | Bacteria | RF00177 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
73 | 4WF1|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
74 | 4U27|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
75 | 4U1V|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
76 | 4V9D|1|AA | Small subunit ribosomal RNA | 16S rRNA, messenger RNA | Escherichia coli | Bacteria | RF00177 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
77 | 4V7V|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
78 | 5U9F|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA, truncated mRNA | Escherichia coli | Bacteria | RF00177 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | Electron microscopy | 3.2 | 2017-03-22 |
79 | 4U25|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
80 | 4WOI|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA, Messenger RNA | Escherichia coli | Bacteria | RF00177 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
81 | 4V85|1|AA | 16S rRNA | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-ray diffraction | 3.2 | 2014-07-09 | ||||
82 | 4U26|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
83 | 4U24|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
84 | 4V7U|1|CA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
85 | 3JCE|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
86 | 5U4I|1|a | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.5 | 2017-01-11 |
87 | 4V9O|1|HA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
88 | 4V9C|1|CA | Small subunit ribosomal RNA | 16S ribosomal RNA, Messenger RNA, mRNA | Escherichia coli | Bacteria | RF00177 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
89 | 4V9C|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA, Messenger RNA, mRNA | Escherichia coli | Bacteria | RF00177 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
90 | 3JBV|1|A | Small subunit ribosomal RNA | RNA (1530-MER) | Escherichia coli | Bacteria | RF00177 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
Release history
Release | 2.138 |
---|---|
Date | 2017-07-26 |
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 4V85|1|AA | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-RAY DIFFRACTION | 3.2 | 1532 | |
2 | 4V64|1|CA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-RAY DIFFRACTION | 3.5 | 1530 | |
3 | 4V54|1|CA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 3.3 | 1530 | |
4 | 4V4H|1|CA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-RAY DIFFRACTION | 3.46 | 1530 | |
5 | 4V4Q|1|CA | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 1530 | |
6 | 4V52|1|CA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-RAY DIFFRACTION | 3.21 | 1530 | |
7 | 4V57|1|CA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-RAY DIFFRACTION | 3.5 | 1530 | |
8 | 4V9P|1|FA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
9 | 4V9P|1|HA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
10 | 4V9O|1|HA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
11 | 4V7U|1|AA | Crystal structure of the E. coli ribosome bound to erythromycin. | X-RAY DIFFRACTION | 3.1 | 1533 | |
12 | 4V7V|1|AA | Crystal structure of the E. coli ribosome bound to clindamycin. | X-RAY DIFFRACTION | 3.29 | 1533 | |
13 | 4V7T|1|AA | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-RAY DIFFRACTION | 3.19 | 1533 | |
14 | 4V6C|1|AA | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.19 | 1533 | |
15 | 4V7S|1|AA | Crystal structure of the E. coli ribosome bound to telithromycin. | X-RAY DIFFRACTION | 3.25 | 1533 | |
16 | 4WWW|1|QA | Crystal structure of the E. coli ribosome bound to CEM-101 | X-RAY DIFFRACTION | 3.1 | 1533 | |
17 | 4WF1|1|AA | Crystal structure of the E. coli ribosome bound to negamycin. | X-RAY DIFFRACTION | 3.09 | 1538 | |
18 | 4U1U|1|AA | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 1538 | |
19 | 4U20|1|AA | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 1538 | |
20 | 4U1V|1|AA | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 1538 | |
21 | 4U27|1|AA | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 1538 | |
22 | 4U25|1|AA | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 1538 | |
23 | 4U26|1|AA | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 1538 | |
24 | 4U24|1|AA | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 1538 | |
25 | 4YBB|1|AA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 1523 | |
26 | 5J91|1|AA | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 1523 | |
27 | 5J5B|1|AA | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 1523 | |
28 | 5IT8|1|AA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 3.12 | 1523 | |
29 | 5J8A|1|AA | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-RAY DIFFRACTION | 3.1 | 1523 | |
30 | 5J7L|1|AA | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 1523 | |
31 | 5JC9|1|AA | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-RAY DIFFRACTION | 3.03 | 1523 | |
32 | 5J88|1|AA | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 1523 | |
33 | 4V9P|1|BA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
34 | 4V9P|1|DA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
35 | 4V9O|1|DA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
36 | 4V9O|1|BA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
37 | 4V9O|1|FA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 | |
38 | 4V9D|1|AA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 1538 | |
39 | 5J88|1|BA | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 1522 | |
40 | 5JC9|1|BA | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-RAY DIFFRACTION | 3.03 | 1522 | |
41 | 5J7L|1|BA | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 1522 | |
42 | 5J8A|1|BA | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-RAY DIFFRACTION | 3.1 | 1522 | |
43 | 5J91|1|BA | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 1522 | |
44 | 5J5B|1|BA | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 1522 | |
45 | 5IT8|1|BA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 3.12 | 1522 | |
46 | 4YBB|1|BA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 1522 | |
47 | 4WF1|1|CA | Crystal structure of the E. coli ribosome bound to negamycin. | X-RAY DIFFRACTION | 3.09 | 1539 | |
48 | 4U1U|1|CA | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 1539 | |
49 | 4U20|1|CA | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 1539 | |
50 | 4U1V|1|CA | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 1539 | |
51 | 4U27|1|CA | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 1539 | |
52 | 4U25|1|CA | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 1539 | |
53 | 4U26|1|CA | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 1539 | |
54 | 4U24|1|CA | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 1539 | |
55 | 4V7U|1|CA | Crystal structure of the E. coli ribosome bound to erythromycin. | X-RAY DIFFRACTION | 3.1 | 1530 | |
56 | 4V6C|1|CA | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.19 | 1530 | |
57 | 4V7S|1|CA | Crystal structure of the E. coli ribosome bound to telithromycin. | X-RAY DIFFRACTION | 3.25 | 1530 | |
58 | 4V7V|1|CA | Crystal structure of the E. coli ribosome bound to clindamycin. | X-RAY DIFFRACTION | 3.29 | 1530 | |
59 | 4V7T|1|CA | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-RAY DIFFRACTION | 3.19 | 1530 | |
60 | 4WWW|1|XA | Crystal structure of the E. coli ribosome bound to CEM-101 | X-RAY DIFFRACTION | 3.1 | 1530 | |
61 | 4V4Q|1|AA | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 1530 | |
62 | 4V4H|1|AA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-RAY DIFFRACTION | 3.46 | 1530 | |
63 | 4V54|1|AA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 3.3 | 1530 | |
64 | 4V52|1|AA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-RAY DIFFRACTION | 3.21 | 1530 | |
65 | 4V57|1|AA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-RAY DIFFRACTION | 3.5 | 1530 | |
66 | 4V64|1|AA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-RAY DIFFRACTION | 3.5 | 1530 | |
67 | 4V50|1|AA | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 1530 | |
68 | 4V50|1|CA | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 1530 | |
69 | 3JBV|1|A | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | ELECTRON MICROSCOPY | 3.32 | 1530 | |
70 | 5H5U|1|h | Mechanistic insights into the alternative translation termination by ArfA and RF2 | ELECTRON MICROSCOPY | 3.01 | 1534 | |
71 | 5U9F|1|A | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | ELECTRON MICROSCOPY | 3.2 | 1539 | |
72 | 5U9G|1|A | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | ELECTRON MICROSCOPY | 3.2 | 1539 | |
73 | 5MGP|1|a | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 1539 | |
74 | 5NWY|1|0 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 1539 | |
75 | 5MDY|1|2 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.35 | 1523 | |
76 | 5MDW|1|2 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.06 | 1523 | |
77 | 5MDZ|1|2 | Structure of the 70S ribosome (empty A site) | ELECTRON MICROSCOPY | 3.1 | 1523 | |
78 | 5MDV|1|2 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 1523 | |
79 | 5U4I|1|a | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | ELECTRON MICROSCOPY | 3.5 | 1523 | |
80 | 5IQR|1|2 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 1522 | |
81 | 4V9D|1|BA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 1539 | |
82 | 4V9C|1|AA | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 1539 | |
83 | 4WOI|1|DA | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 1539 | |
84 | 5AFI|1|a | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 1528 | |
85 | 5UYM|1|A | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | ELECTRON MICROSCOPY | 3.2 | 1539 | |
86 | 5LZE|1|a+ 5LZE|1|y+ 5LZE|1|v+ 5LZE|1|x | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | ELECTRON MICROSCOPY | 3.5 | 1528 | |
87 | 5LZD|1|a | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | ELECTRON MICROSCOPY | 3.4 | 1528 | |
88 | 3JCE|1|a | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 1533 | |
89 | 4WOI|1|AA | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 1538 | |
90 | 4V9C|1|CA | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 1538 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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