#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15J7L|1|AA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction315342016-07-27
24YBB|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.115342015-03-18
35J8A|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.115342016-07-06
45JC9|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.0315342016-07-06
54WOI|1|DASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction315392015-08-05
64WOI|1|AASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction315382015-08-05
75IT8|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.1215342016-07-27
84V9P|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
94V9O|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
105J7L|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction315332016-07-27
114V9P|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
124V9P|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
134V9P|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
145J8A|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.115332016-07-06
154V9O|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
165J91|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.9615342016-07-06
176I7V|1|AASmall subunit ribosomal RNA16S ribosmal RNAEscherichia coliBacteriaRF00177Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.915332018-12-05
184V6C|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.1915332014-07-09
195JC9|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.0315332016-07-06
204V52|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.2115302014-07-09
214V9O|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
224V7T|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.1915332014-07-09
234V57|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.515302014-07-09
244WWW|1|QASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.115332014-12-24
254V52|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.2115302014-07-09
264V57|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.515302014-07-09
274U27|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.815382014-07-30
285J88|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.3215342016-07-06
294V7V|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.2915332014-07-09
304V54|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.315302014-07-09
314WF1|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.0915382014-11-05
324YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.115332015-03-18
334U1U|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9515382014-07-30
344V64|1|CASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.515302014-07-09
354U26|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.815382014-07-30
364V9D|1|AASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315382014-07-09
376I7V|1|BASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.915332018-12-05
384U24|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.915382014-07-30
394V7S|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.2515332014-07-09
404U25|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.915382014-07-30
415IT8|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.1215332016-07-27
424V9D|1|BASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315392014-07-09
434V54|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.315302014-07-09
444U27|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.815392014-07-30
454V64|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.515302014-07-09
464V7U|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.115332014-07-09
474V50|1|CASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.2215302014-07-09
484V9O|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
494WWW|1|XASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.115302014-12-24
504V4Q|1|CASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.4615302014-07-09
514U20|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.915382014-07-30
524U1U|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9515392014-07-30
534V50|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.2215302014-07-09
544U1V|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction315382014-07-30
554U25|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.915392014-07-30
564V6C|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.1915302014-07-09
575J88|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.3215332016-07-06
584V4Q|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.4615302014-07-09
594U26|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.815392014-07-30
604V85|1|AA16S rRNACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.215322014-07-09
615J91|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.9615332016-07-06
624V7T|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.1915302014-07-09
634WF1|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.0915392014-11-05
644U24|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.915392014-07-30
654U1V|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction315392014-07-30
664U20|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.915392014-07-30
674V7S|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.2515302014-07-09
684V7V|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.2915302014-07-09
694V9C|1|CASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNA, mRNAEscherichia coliBacteriaRF00177Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.315382014-07-09
704V9C|1|AASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNA, mRNAEscherichia coliBacteriaRF00177Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.315392014-07-09
714V7U|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.115302014-07-09
725J5B|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.815342016-07-27
734V4H|1|CASmall subunit ribosomal RNA16S RIBOSOMAL RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.4615302014-07-09
744V4H|1|AASmall subunit ribosomal RNA16S RIBOSOMAL RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.4615302014-07-09
755J5B|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.815332016-07-27
765AFI|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF001772.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.915392015-03-11
775NWY|1|0Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF001772.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexElectron microscopy2.915392017-07-19
783R8O|1|A16S rRNA, messenger RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315392011-06-01
793R8N|1|A16S rRNA, messenger RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315382011-06-01
806H4N|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeElectron microscopy315342018-09-05
816ORE|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Release complex 70SElectron microscopy2.915342019-06-19
825H5U|1|hSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Mechanistic insights into the alternative translation termination by ArfA and RF2Electron microscopy3.0115342017-01-25
835WDT|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy315402018-04-25
845WFS|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy315402018-05-02
855MDV|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)Electron microscopy2.9715342016-12-14
865MGP|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.115392016-12-14
876ENU|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.115392017-11-22
885WE4|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu wt complex with GppNHpElectron microscopy3.115402018-04-25
896ENF|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.215392017-11-22
905U9G|1|ASmall subunit ribosomal RNA16S ribosomal RNA, truncated mRNAEscherichia coliBacteriaRF001773.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)Electron microscopy3.215392017-03-22
915U9F|1|ASmall subunit ribosomal RNA16S ribosomal RNA, truncated mRNAEscherichia coliBacteriaRF001773.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)Electron microscopy3.215392017-03-22
923JCE|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.215332016-01-13
935UYM|1|ASmall subunit ribosomal RNA16S ribosomal RNA, mRNAEscherichia coliBacteriaRF0017770S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)Electron microscopy3.215392017-06-07
945MDW|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.0615342016-12-14
955MDZ|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of the 70S ribosome (empty A site)Electron microscopy3.115342016-12-14
966C4I|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Conformation of methylated GGQ in the peptidyl transferase center during translation terminationElectron microscopy3.2415342018-02-21
974V80|1|AA16S rRNACrystal structure of the E. coli ribosome bound to CEM-101.X-ray diffraction3.315332014-07-09
984V80|1|CA16S rRNACrystal structure of the E. coli ribosome bound to CEM-101.X-ray diffraction3.315302014-07-09
995O2R|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeElectron microscopy3.415392017-07-26
1005WFK|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)Electron microscopy3.415402018-05-02
1015LZD|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)Electron microscopy3.415392016-11-23
1025WE6|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu H84A complex with GTP and cognate tRNAElectron microscopy3.415392018-04-25
1036BU8|1|ASmall subunit ribosomal RNA16S ribosomal RNA, mRNAEscherichia coliBacteriaRF0017770S ribosome with S1 domains 1 and 2 (Class 1)Electron microscopy3.515392018-01-31
1045LZE|1|a+ 5LZE|1|y+ 5LZE|1|v+ 5LZE|1|xSmall subunit ribosomal RNA + Selenocysteine transfer RNA + Transfer RNA16S ribosomal RNA, fMetSec-tRNASec, SECIS mRNA, tRNAfMetEscherichia coliBacteriaRF00177 + RF01852 + RF00005Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)Electron microscopy3.515282016-11-23
1055MDY|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.3515342016-12-21
1065U4I|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeElectron microscopy3.515332017-01-11
1075IQR|1|2Small subunit ribosomal RNASSU rRNAEscherichia coliBacteriaRF00177Structure of RelA bound to the 70S ribosomeElectron microscopy315332016-05-04
1083JBV|1|ASmall subunit ribosomal RNARNA (1530-MER)Escherichia coliBacteriaRF00177Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.3215302016-01-27
1096OSQ|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177RF1 accommodated state bound Release complex 70S at long incubation time pointElectron microscopy3.515342019-06-26
1106ORL|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177RF1 pre-accommodated 70S complex at 24 msElectron microscopy3.515342019-06-19

Release history

Release3.803.813.823.833.843.853.863.873.883.893.903.913.92
Date2019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-19

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
13JCE|1|aStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.21533
24WOI|1|AA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31538
34V9C|1|CAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.31538
45U4I|1|aStructural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.51533
55IQR|1|2Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY31533
64V9D|1|BAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
73R8O|1|AStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
84V9C|1|AAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.31539
94WOI|1|DA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31539
105LZD|1|aStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.41539
115LZE|1|a+ 5LZE|1|y+ 5LZE|1|v+ 5LZE|1|xStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.51528
126BU8|1|A70S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.51539
135UYM|1|A70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.21539
145AFI|1|a2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91539
155WFS|1|a70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY31540
165WDT|1|a70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY31540
175WE4|1|a70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.11540
185WE6|1|a70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.41539
195O2R|1|aCryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeELECTRON MICROSCOPY3.41539
206ORL|1|2RF1 pre-accommodated 70S complex at 24 msELECTRON MICROSCOPY3.51534
216OSQ|1|2RF1 accommodated state bound Release complex 70S at long incubation time pointELECTRON MICROSCOPY3.51534
226ORE|1|2Release complex 70SELECTRON MICROSCOPY2.91534
236C4I|1|aConformation of methylated GGQ in the peptidyl transferase center during translation terminationELECTRON MICROSCOPY3.241534
245MDV|1|2Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.971534
255MDZ|1|2Structure of the 70S ribosome (empty A site)ELECTRON MICROSCOPY3.11534
265MDW|1|2Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.061534
275MDY|1|2Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.351534
285NWY|1|02.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.91539
296H4N|1|aStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY31534
305MGP|1|aStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.11539
316ENF|1|aCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.21539
326ENU|1|aPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.11539
335WFK|1|a70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.41540
345U9F|1|A3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)ELECTRON MICROSCOPY3.21539
355U9G|1|A3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)ELECTRON MICROSCOPY3.21539
365H5U|1|hMechanistic insights into the alternative translation termination by ArfA and RF2ELECTRON MICROSCOPY3.011534
373JBV|1|AMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.321530
384V50|1|CACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.221530
394V50|1|AACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.221530
404V64|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.51530
414V57|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.51530
424V52|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.211530
434V54|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.31530
444V4H|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.461530
454V4Q|1|AACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.461530
464V80|1|CACrystal structure of the E. coli ribosome bound to CEM-101.X-RAY DIFFRACTION3.31530
474WWW|1|XACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.11530
484V7S|1|CACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.251530
494V7V|1|CACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.291530
504V7T|1|CACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.191530
514V6C|1|CACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.191530
524V7U|1|CACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.11530
536I7V|1|BARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.91533
544U24|1|CACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91539
554U26|1|CACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81539
564U25|1|CACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91539
574U27|1|CACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81539
584U1V|1|CACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31539
594U20|1|CACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91539
604U1U|1|CACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951539
614WF1|1|CACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.091539
624YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11533
635J88|1|BAStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.321533
645IT8|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.121533
655J91|1|BAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961533
665J5B|1|BAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81533
675J8A|1|BAStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.11533
685J7L|1|BAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31533
695JC9|1|BAStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.031533
703R8N|1|AStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
714V9D|1|AAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
724V9O|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
734V9O|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
744V9O|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
754V9P|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
764V9P|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
774WF1|1|AACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.091538
784U1V|1|AACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31538
794U20|1|AACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91538
804U1U|1|AACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951538
814U27|1|AACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81538
824U25|1|AACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91538
834U26|1|AACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81538
844U24|1|AACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91538
856I7V|1|AARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.91533
864YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11534
875J91|1|AAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961534
885J5B|1|AAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81534
895J8A|1|AAStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.11534
905J7L|1|AAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31534
915IT8|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.121534
925JC9|1|AAStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.031534
935J88|1|AAStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.321534
944V7U|1|AACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.11533
954V7V|1|AACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.291533
964V7T|1|AACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.191533
974V6C|1|AACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.191533
984V7S|1|AACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.251533
994V80|1|AACrystal structure of the E. coli ribosome bound to CEM-101.X-RAY DIFFRACTION3.31533
1004WWW|1|QACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.11533
1014V9O|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1024V9P|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1034V9P|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1044V57|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.51530
1054V52|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.211530
1064V64|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.51530
1074V54|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.31530
1084V4H|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.461530
1094V4Q|1|CACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.461530
1104V85|1|AACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.21532

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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