NR_3.5_61444.2

Members (49)
History
Heat map

#	IFE	Standardized name	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	1VW9\|A (rep)					S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II). This entry contains the small ribosomal subunit.	Electron microscopy	6.1	2014-06-11
2	1VWV\|A					S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I). This entry contains the small ribosomal subunit.	Electron microscopy	6.1	2014-06-11
3	1VXW\|g					Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA, this entry contains the small ribosomal subunit, mRNA, and tRNA)	Electron microscopy	6.2	2014-08-06
4	1VXZ\|g					Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs, this entry contains the small ribosomal subunit, mRNA, and tRNA)	Electron microscopy	6.3	2014-08-06
5	3IZE\|A					Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	Electron microscopy	8.8	2010-12-01
6	3J80\|2	Small subunit ribosomal RNA	Kluyveromyces lactis	Eukarya	RF01960	CryoEM structure of 40S-eIF1-eIF1A preinitiation complex	Electron microscopy	3.75	2014-11-05
7	3J81\|2	Small subunit ribosomal RNA	Kluyveromyces lactis	Eukarya	RF01960	CryoEM structure of a partial yeast 48S preinitiation complex	Electron microscopy	4	2014-11-05
8	3JYV\|A					Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution	Electron microscopy	8.9	2009-12-22
9	3O2Z\|1					Yeast 80S ribosome. This entry consists of the 40S subunit of the first 80S in the asymmetric unit.	X-ray diffraction	4	2010-12-15
10	3O30\|1					Yeast 80S ribosome. This entry consists of the 40S subunit of the second 80S in the asymmetric unit.	X-ray diffraction	4	2010-12-15
11	3U5B\|2					The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome A	X-ray diffraction	3	2011-12-21
12	3U5F\|6					The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B	X-ray diffraction	3	2011-12-21
13	4BYO\|2					Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	4.3	2013-11-20
14	4BYV\|2					Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	6.6	2013-11-20
15	4CUX\|2					Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES	Electron microscopy	3.7	2014-05-14
16	4UJF\|A					Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
17	4UJH\|d					Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
18	4UJK\|A					Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
19	4UJM\|d					Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
20	4UJP\|A					Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
21	4UJR\|d					Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
22	4UJU\|A					Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
23	4UJW\|d					Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
24	4UJZ\|A					Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
25	4UK1\|d					Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
26	4UK4\|A					Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
27	4UK6\|d					Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
28	4UK9\|A					Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
29	4UKB\|d					Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
30	4UKF\|A					Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
31	4UKH\|d					Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
32	4UKK\|A					Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
33	4UKM\|d					Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
34	4UKP\|A					Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
35	4UKR\|d					Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
36	4UKU\|A					Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
37	4UKW\|d					Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
38	4UKZ\|A					Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
39	4UL1\|d					Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
40	4UL4\|A					Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
41	4UL6\|d					Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
42	4UL9\|A					Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
43	4ULB\|d					Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
44	4ULE\|A					Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
45	4ULG\|d					Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
46	4ULJ\|A					Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
47	4ULM\|d					Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
48	4ULP\|A					Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
49	4ULR\|d					Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22

Release history

Release	1.85	1.86	1.87	1.88	1.89
Date	2014-11-07	2014-11-14	2014-11-21	2014-11-28	2014-12-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	Length

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_61444.2 Obsolete

Release history

Parents

Children